New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2365763 | 47 (0.960) | 4 (0.080) | 4/240 | NT | 7.8% | coding (156/906 nt) | lysR | transcriptional regulator LysR |
? | NC_002947 | = 2365793 | 50 (1.060) | coding (186/906 nt) | lysR | transcriptional regulator LysR |
TCCGTCCGCCACATCGAAGTGTTCCGCGCCATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGC > NC_002947/2365617‑2365911 | tccgtccgCCACATCGAAGTGTTCCGCGCCATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAg > 1:558543/1‑150 (MQ=255) cataTCGAAGTGTTCCGCGCCATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCTAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGgcgc < 2:138736/147‑1 (MQ=255) cGAAGTGTTCCGCGCCATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTAGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCtggt > 1:1126181/1‑150 (MQ=255) gcgcCATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGccc > 2:1130161/1‑150 (MQ=255) gcgcCATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCGGGAGCAGGTGACTGGCCTGAACCTGTGCGAGCGCAAGGGCGGGCGCCTGGTGGCGACGGccc > 1:584605/1‑150 (MQ=255) catcatGGCCGCTGGCAGTGTCCCGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCTACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgc < 2:1167355‑M2/150‑3 (MQ=255) catcatGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgc < 1:736741‑M2/150‑3 (MQ=255) cTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGa < 2:899027/150‑1 (MQ=255) tGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTAGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGAt < 2:1126181/150‑1 (MQ=255) aGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGaa < 2:736741/150‑1 (MQ=255) tgtCACGGGGGCGGCGCGCCCGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACgg < 2:102566/125‑1 (MQ=255) tgtCACGGGGGCGGCGCGCCCGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACgg > 1:102566/1‑125 (MQ=255) tCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAagag > 1:785396/1‑149 (MQ=255) tCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAagag < 2:785396/149‑1 (MQ=255) cACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGa > 1:939187/1‑119 (MQ=255) cACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGa < 2:939187/119‑1 (MQ=255) aCGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTc > 1:995682/1‑150 (MQ=255) gcggcgCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg < 1:93291/150‑1 (MQ=255) cACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCctgggccgtcgccaccaggcgcccgccctcgcgctcgaacaggttcaggccag > 1:104508‑M1/1‑73 (MQ=255) cACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCctgggccgtcgccaccaggcgcccgccctcgcgctcgaacaggttcaggccag < 2:104508‑M1/126‑54 (MQ=255) aCCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAg > 2:80271/1‑150 (MQ=255) tCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGGCTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCgg > 2:93901/1‑150 (MQ=255) tCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGC‑GGAGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGga > 2:304834/1‑150 (MQ=255) aGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGgatcg > 1:388152/1‑150 (MQ=255) aCCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGC < 2:575208‑M1/60‑1 (MQ=255) aCCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGC > 1:575208‑M1/1‑60 (MQ=255) ccGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACATGTTCGAGCGCAAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCt > 2:954518/1‑150 (MQ=255) gTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCttt > 2:778984/1‑150 (MQ=255) tCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCctgggccgtcgccaccaggcgcccgccctcgcgctcgaa > 1:217308‑M1/1‑56 (MQ=255) tCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCctgggccgtcgccaccaggcgcccgccctcgcgctcgaa < 2:217308‑M1/95‑40 (MQ=255) tCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg > 1:1205883/1‑116 (MQ=255) tCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg < 2:1205883/116‑1 (MQ=255) aGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCg > 2:376727/1‑134 (MQ=255) aGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCg < 1:376727/134‑1 (MQ=255) cgcgAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAg < 2:995682/150‑1 (MQ=255) gcgAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg < 1:1129122/110‑1 (MQ=255) gcgAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg > 2:1129122/1‑110 (MQ=255) tGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATcc < 1:1167355/150‑1 (MQ=255) gcgGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCaa < 2:558543/150‑1 (MQ=255) cTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTc > 1:1072267/1‑150 (MQ=255) cTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTc < 1:910400/150‑1 (MQ=255) aGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACtt < 1:77027/142‑1 (MQ=255) aGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACtt > 2:77027/1‑142 (MQ=255) ggTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGc < 1:553731/107‑1 (MQ=255) ggTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGc > 2:553731/1‑107 (MQ=255) gTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGc > 1:1207988/1‑150 (MQ=255) cTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctgacggtcggctgcgaggtg < 2:104508‑M2/126‑74 (MQ=255) cTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctgacggtcggctgcgaggtg > 1:104508‑M2/1‑53 (MQ=255) cTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGgatcgat > 2:401665/1‑110 (MQ=255) cTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGgatcgat < 1:401665/110‑1 (MQ=255) tGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCt > 1:1073264/1‑150 (MQ=255) gCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTgg > 1:93686/1‑150 (MQ=255) ccTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGc > 2:272529/1‑150 (MQ=255) aaCCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATc < 1:778984/150‑1 (MQ=255) cTGTTCGAGCGCGAGGGC‑GGAGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCAcct < 1:304834/150‑1 (MQ=255) ttCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctga < 2:217308‑M2/95‑57 (MQ=255) ttCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctga > 1:217308‑M2/1‑39 (MQ=255) ttCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCAcctgc > 2:508874/1‑150 (MQ=255) ttCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCAcctgc < 2:1072267/150‑1 (MQ=255) gAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCAcctgcctg > 1:388084/1‑150 (MQ=255) gcctgggccgtcgccaccaggcgcccgccctcgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctgacggtcggctgcgaggtgaacagcaggcgcgccgcccccgtgacactgccagcggccatgatg < 1:736741‑M1/150‑149 (MQ=255) gcctgggccgtcgccaccaggcgcccgccctcgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctgacggtaggctgcgaggtgaacagcaggcgcgccgcccccgggacactgccagcggccatgatg < 2:1167355‑M1/150‑149 (MQ=255) | TCCGTCCGCCACATCGAAGTGTTCCGCGCCATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGC > NC_002947/2365617‑2365911 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |