| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2426127 | 45 (0.920) | 4 (0.080) | 4/244 | NT | 9.0% | coding (810/942 nt) | PP_2127 | sensor histidine kinase |
| ? | NC_002947 | = 2426181 | 37 (0.770) | coding (756/942 nt) | PP_2127 | sensor histidine kinase | |||||
ATCTACCAGCAGTAGTCTACAGGTCATGGTTGGTAATACTCCTGGCGCGTTGCTGGGTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2425979‑2426127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCCCTGCCCGGCACCCGGCCGAGGCCGGTCAGCGCGGCCTGGCCGGCATGCAGGAGCGGGTAATCGCGCTGCAGGGCAGCCTCGACATCACCAGTCAGCCTGGCCGAGGCACGCAGATCGAAGCGATGTTCCCGTGGTCCCCGCGCACC < NC_002947/2426181‑2426034 ATCTACCAGCAGTAGTCTACAGGTCATGGTTGGTAATACTCCTGGCGCGTTGCTGGGTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGC < 1:717565/149‑1ATCTACCAGCAGTAGTCTACAGGTCATGGTTGGTAATACTCCTGGCGCGTTGCTGGGTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGC > 2:717565/1‑149 GTTGGTAATACTCCTGGCGCGTTGCTGGGTGCGCGGGGACCACTGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCCCCTGCCCGGCACCCGGCCGAGGCCGGTC > 2:799046/1‑150 GGTGCGCGGGGACCACTGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCCCCTGCCCGGCACCCGGCCGAGGCCGGTCAGCGCGGCCTGGCCGGCATGCAGGAGC < 1:799046/150‑1 ACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCCCCTGCCCGGCACCAGGCCGAGGCCGGTCAGCGCGGCCTGGCCGGCATGCAGGAGCGGG < 1:1121495/139‑1 ACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCCCCTGCCCGGCACCAGGCCGAGGCCGGTCAGCGCGGCCTGGCCGGCATGCAGGAGCGGG > 2:1121495/1‑139 GCCCCTGCCCGGCACCCGGCCGAGGCCGGTCAGCGCGGCCTGGCCGGCATGCAGGAGCGGGTAATCGCGCTGCAGGGCAGCCTCGACATCACCAGTCAGCCTGGCCGAGGCACGCAGATCGAAGCGATGTTCCCGTGGTCCCCGCGCACC > 1:5392/1‑150 GCCCCTGCCCGGCACCCGGCCGAGGCCGGTCAGCGCGGCCTGGCCGGCATGCAGGAGCGGGTAATCGCGCTGCAGGGCAGCCTCGACATCACCAGTCAGCCTGGCCGAGGCACGCAGATCGAAGCGATGTTCCCGTGGTCCCCGCGCACC > 2:791013/1‑150 ATCTACCAGCAGTAGTCTACAGGTCATGGTTGGTAATACTCCTGGCGCGTTGCTGGGTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2425979‑2426127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCCCTGCCCGGCACCCGGCCGAGGCCGGTCAGCGCGGCCTGGCCGGCATGCAGGAGCGGGTAATCGCGCTGCAGGGCAGCCTCGACATCACCAGTCAGCCTGGCCGAGGCACGCAGATCGAAGCGATGTTCCCGTGGTCCCCGCGCACC < NC_002947/2426181‑2426034 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |