New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2426127	45 (0.920)	4 (0.080)	4/244	NT	9.0%	coding (810/942 nt)	PP_2127	sensor histidine kinase
	?	NC_002947	= 2426181	37 (0.770)					coding (756/942 nt)	PP_2127	sensor histidine kinase

GGTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGCCATGGCCACGGCTTC  >  NC_002947/2426034‑2426330                                                                                                                                                    |                                                                                                                                                       ggTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGgc                                                                                                                                                      >  2:791013‑M2/1‑148 (MQ=255) ggTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGgc                                                                                                                                                      >  1:5392‑M2/1‑148 (MQ=255)     cgcgGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGaaa                                                                                                                                                  <  2:83234/150‑1 (MQ=255)              cACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCa                                                                                                                                         >  1:505732/1‑150 (MQ=255)                     aCATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCt                                                                                                                                  <  2:936125/150‑1 (MQ=255)                        tCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGa                                                                                                                               <  2:1111881/150‑1 (MQ=255)                          gCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATc                                                                                                                             <  1:1173206/150‑1 (MQ=255)                           cTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGCTCg                                                                                                                            >  1:71921/1‑150 (MQ=255)                            ttCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGa                                                                                                                           >  1:1057605/1‑150 (MQ=255)                                   tGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGAc                                                                                                                   >  2:392548/1‑150 (MQ=255)                                           tCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑c                                                                                                                         <  1:620486/136‑1 (MQ=255)                                           tCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑c                                                                                                                         >  2:620486/1‑136 (MQ=255)                                               ccAGGCTGATTTGTGATGTCTAGGCTGCCCTGCAGCGCGATTACCCGTTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAggg                                                                                                       <  2:71921/150‑1 (MQ=255)                                                 aGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGt                                                                                                     <  1:392548/150‑1 (MQ=255)                                                      gACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCGTCTTGCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGtt                                                                                                <  1:85990/150‑1 (MQ=255)                                                      gACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGtt                                                                                                >  1:52198/1‑150 (MQ=255)                                                      gACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGtt                                                                                                <  2:625613/150‑1 (MQ=255)                                                         tGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCa                                                                                             <  2:1113245/150‑1 (MQ=255)                                                         tGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCa                                                                                             >  2:1032206/1‑150 (MQ=255)                                                         tGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGAAAGCCCTAAAAGGGAGCGTTGCa                                                                                             >  2:1036792/1‑150 (MQ=255)                                                            tGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCATGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACAACCAGCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGc                                                                                          >  2:676253/1‑150 (MQ=255)                                                                   gAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGTCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGAc                                                                                   >  1:37506/1‑150 (MQ=255)                                                                            cTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTtgtg                                                                          <  2:1057605/150‑1 (MQ=255)                                                                                          cccGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCTGGTGCCGGGCAGGGgcgggtaatcgcgctgcagggcagcctcgacatcaccagtcagcctggccgaggcacgcagatcgaagcgatgttcccgt                                                                        <  1:1121495‑M2/139‑81 (MQ=255)                                                                                          cccGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCTGGTGCCGGGCAGGGgcgggtaatcgcgctgcagggcagcctcgacatcaccagtcagcctggccgaggcacgcagatcgaagcgatgttcccgt                                                                        >  2:1121495‑M2/1‑59 (MQ=255)                                                                                          cccGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGgc                                                            <  2:505732/150‑1 (MQ=255)                                                                                             gCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGgcgggtaatcgcgctgcagggcagcctcgacatcaccagtcagcctggccgaggcacgcagatcgaagcgatgttccagtggtccccgcgcacc                                                          <  1:799046‑M2/150‑95 (MQ=255)                                                                                             gCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCgca                                                         >  2:752047/1‑150 (MQ=255)                                                                                                           gCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGt                                                   <  1:128536/142‑1 (MQ=255)                                                                                                           gCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGt                                                   >  2:128536/1‑142 (MQ=255)                                                                                                            ccAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTg                                          <  2:505454/150‑1 (MQ=255)                                                                                                                 ccGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTg                                                 <  2:652954/138‑1 (MQ=255)                                                                                                                 ccGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTg                                                 >  1:652954/1‑138 (MQ=255)                                                                                                                        gACCGGCCTCGGCCGGGTGCCGGGCAGGGgcgggtaatcgcgctgcagggcagcctcgacatcaccagtcagcctggccgaggcacgcagatcgaagcgatgttccagtggtccccgcgcacccagcaacgcgccaggagtattaccaac                               >  2:799046‑M2/1‑29 (MQ=255)                                                                                                                           cGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATACAACT‑CATCGAGCAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGCATGTTTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATAc                           >  1:874419/1‑150 (MQ=255)                                                                                                                                tCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCa                                                                                             <  2:236222/79‑1 (MQ=255)                                                                                                                                tCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCa                                                                                             >  1:236222/1‑79 (MQ=255)                                                                                                                                tCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCgg                                                                                        <  1:994589/84‑1 (MQ=255)                                                                                                                                tCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCgg                                                                                        >  2:994589/1‑84 (MQ=255)                                                                                                                                    ccGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGcctcct                                    <  2:288946/132‑1 (MQ=255)                                                                                                                                    ccGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGcctcct                                    >  1:288946/1‑132 (MQ=255)                                                                                                                                     cGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGc                 <  1:1032206/150‑1 (MQ=255)                                                                                                                                        gTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGCCAt              >  2:335519/1‑150 (MQ=255)                                                                                                                                        gTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGCCAt              <  1:752047/150‑1 (MQ=255)                                                                                                                                                    ggCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGCCATGGCCACGGCTtc  >  1:630461/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                       GGTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGCCATGGCCACGGCTTC  >  NC_002947/2426034‑2426330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.