| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2469275 | 33 (0.670) | 4 (0.090) | 4/234 | NT | 10.7% | coding (109/708 nt) | vacJ | lipoprotein VacJ |
| ? | NC_002947 | = 2469297 | 36 (0.780) | coding (131/708 nt) | vacJ | lipoprotein VacJ | |||||
GCGCGATGTGTTGCGCTTGCGGCCAAGAAATTCGATGGAGAAACATCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2469119‑2469275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaagatcGGGCGGTTGACCGCTTCCCAGGGATCTTCCTCGGTGGCGGCCTGGGTGGCTGCCGCGGGCGCCAGCAGCAAGCTGGCGCAGACACAGGCCTGGGTGACTCGTTCGA < NC_002947/2469297‑2469192 GCGCGATGTGTTGCGCTTGCGGCCAAGAAATTCGATGGAGAAACATCTATTCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAG > 2:181732/1‑150 TGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCGGGCGGTTGACCGCTTCCCAGGGATCTTCCTCG > 1:852614/1‑122 TGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCGGGCGGTTGACCGCTTCCCAGGGATCTTCCTCG < 2:852614/122‑1 CTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCGGGCGGTTGACCGCTTCCCAGGGATCTTCCTC < 1:224657/97‑1 CTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCGGGCGGTTGACCGCTTCCCAGGGATCTTCCTC > 2:224657/1‑97 GAAGATCGGGCGGTTGACCGCTTCCCAGGGATCTTCCTCGGTGGCGGCCTGGGTGGCTGCCGCGGGCGCCAGCAGCAAGCTGGCGCAGACACAGGCCTGGGTGACTCGTTCGA < 1:463828/113‑1 GAAGATCGGGCGGTTGACCGCTTCCCAGGGATCTTCCTCGGTGGCGGCCTGGGTGGCTGCCGCGGGCGCCAGCAGCAAGCTGGCGCAGACACAGGCCTGGGTGACTCGTTCGA > 2:463828/1‑113 GCGCGATGTGTTGCGCTTGCGGCCAAGAAATTCGATGGAGAAACATCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2469119‑2469275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaagatcGGGCGGTTGACCGCTTCCCAGGGATCTTCCTCGGTGGCGGCCTGGGTGGCTGCCGCGGGCGCCAGCAGCAAGCTGGCGCAGACACAGGCCTGGGTGACTCGTTCGA < NC_002947/2469297‑2469192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |