New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2469275	33 (0.670)	4 (0.090)	4/234	NT	10.7%	coding (109/708 nt)	vacJ	lipoprotein VacJ
	?	NC_002947	= 2469297	36 (0.780)					coding (131/708 nt)	vacJ	lipoprotein VacJ

GAAACATCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTGGGGGACGTGACCAACCTGG  >  NC_002947/2469158‑2469434                                                                                                                                            |                                                                                                                                          gaAACATCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGc                                                                                                                                 >  2:735120/1‑150 (MQ=255)       tCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAAc                                                                                                                           <  1:181732/150‑1 (MQ=255)              gTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTTCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACAccc                                                                                                                    >  2:515452/1‑150 (MQ=255)              gTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACAccc                                                                                                                    >  1:607864/1‑150 (MQ=255)               tAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCAGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTAAACGACACCCt                                                                                                                   >  2:533801/1‑150 (MQ=255)                       gTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCt                                                                                                           >  2:737666/1‑150 (MQ=255)                        tGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTa                                                                                                          >  2:731207/1‑150 (MQ=255)                         gCCAGTGTGAGCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGACCCCTGGGAAGCGGTCTACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTAt                                                                                                         <  1:1159356/150‑1 (MQ=255)                          ccAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATg                                                                                                        >  1:1057247/1‑150 (MQ=255)                          ccAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACCACCCCCTCGACACCTAtc                                                                                                        >  2:330664/1‑149 (MQ=255)                                   tCGAACGAGTCACCCCGGCCTGTGCCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAAc                                                                                               <  2:1031959/150‑1 (MQ=255)                                   tCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttc                                                                                                                                    >  2:463828‑M2/1‑106 (MQ=255)                                   tCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttc                                                                                                                                    <  1:463828‑M2/113‑8 (MQ=255)                                           gTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGCCAACCGCCCGATCTTCCGCTTCAACGACACCCCCGACACCTATGCCCTCAAACCCTTGGcc                                                                                       >  2:300188/1‑150 (MQ=255)                                                 cAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGc                                                                                 <  2:80703/150‑1 (MQ=255)                                                    gCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCAt                                                                                            <  1:1166006/136‑1 (MQ=255)                                                    gCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCAt                                                                                            >  2:1166006/1‑136 (MQ=255)                                                     ccTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTAcc                                                                             <  1:731207/150‑1 (MQ=255)                                                                  cAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACAcc                                                                                                            <  1:518398/106‑1 (MQ=255)                                                                  cAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACAcc                                                                                                            >  2:518398/1‑106 (MQ=255)                                                                     cTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCcaca                                                             <  1:737666/150‑1 (MQ=255)                                                                      ttGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAg                                                            >  1:910289/1‑150 (MQ=255)                                                                          tgctgGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTcc                                                        >  1:99703/1‑150 (MQ=255)                                                                           tctgGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCt                                                       <  1:515452/149‑1 (MQ=255)                                                                            ctgGCGCCCGCGGCAGCCCCCGAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATTTTCCGCTACAACGACACACTCCACACCTATGCCCTCAAACCATTGGCCAAGGGCTCCCAGGCGGACACTCCACGTTTCCTc                                                      >  2:131550/1‑150 (MQ=255)                                                                               gcgcCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGaa                                                   >  2:190404/1‑150 (MQ=255)                                                                                     gcgGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGc                                             >  1:1208183/1‑150 (MQ=255)                                                                                      cgGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCa                                            <  2:607864/150‑1 (MQ=255)                                                                                                         cACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCaa                         >  1:234067/1‑150 (MQ=255)                                                                                                            cGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttcctcggtggcggcctgggtggctgccgcgggcgccagcagcaagctggcgcagacacaggcctgggtgactcgttcgatcaca                                                  >  1:852614‑M2/1‑33 (MQ=255)                                                                                                            cGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttcctcggtggcggcctgggtggctgccgcgggcgccagcagcaagctggcgcagacacaggcctgggtgactcgttcgatcaca                                                  <  2:852614‑M2/122‑90 (MQ=255)                                                                                                             gAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttcctcggtggcggcctgggtggctgccgcgggcgccagcagcaagctggcgcagacacag                                                                          >  2:224657‑M2/1‑32 (MQ=255)                                                                                                             gAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttcctcggtggcggcctgggtggctgccgcgggcgccagcagcaagctggcgcagacacag                                                                          <  1:224657‑M2/97‑66 (MQ=255)                                                                                                              aGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCaa                                                                                                                            <  1:648479/46‑1 (MQ=255)                                                                                                              aGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCaa                                                                                                                            >  2:648479/1‑46 (MQ=255)                                                                                                              aGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTgg                    <  2:99703/150‑1 (MQ=255)                                                                                                              aGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTgg                    >  1:834182/1‑150 (MQ=255)                                                                                                                      cccTAGGGAGCGGTAAACCGCCCGATGTTCCGCTTGAACGAGCGTCTCGAAAGCTAAGCCCGTAAGCCATTGTCCAAATCCTACCAGTCGCTGACTCCACAAAAACAAGAAGATGGCATCCACAACATCTTTCGCAACCTGGGGGACGta            >  2:448586/1‑149 (MQ=255)                                                                                                                        cTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTGGGGGACGTGAc          >  1:346316/1‑150 (MQ=255)                                                                                                                             aaGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTGGGGGACGTGACCAAcc     >  2:807468/1‑150 (MQ=255)                                                                                                                                cGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTGGGGGACGTGACCAACCTgg  <  1:641225/150‑1 (MQ=255)                                                                                                                                       ccGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTggg                   >  2:730803/1‑126 (MQ=255)                                                                                                                                       ccGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTggg                   <  1:730803/126‑1 (MQ=255)                                                                                                                                            |                                                                                                                                          GAAACATCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTGGGGGACGTGACCAACCTGG  >  NC_002947/2469158‑2469434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.