| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3985558 = | 51 (1.040) | 7 (0.150) | 3/240 | NT | 13.3% | coding (798/855 nt) | PP_3513 | LysR family transcriptional regulator |
| ? | NC_002947 | 3985582 = | 42 (0.890) | coding (822/855 nt) | PP_3513 | LysR family transcriptional regulator | |||||
GACAGGCTAAGGGGCGGGGTGGGGGGAAGGCTTGTCGCTGGGTGTACCGGTTGTTGTGTCTGGGCGCACTTCAAGTTCGGGCAGGCGACACAACTATTGCCCCAACATCTGTCGCACCAGCCATTGCCCGGCCGGCCCCAAGGCAC‑‑‑‑GCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3985708‑3985558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGCCCCTTAGCCTGTCACCACGCGCCGCCCCGCCGC > NC_002947/3985582‑3985728 GACAGGCTAAGGGGCGGGGTGGGGGGAAGGCTTGTCGCTGGGTGTACCGGTTGTTGTGTCTGGGCGCACTTCAAGTTCGGGCAGGCGACACAACTATTGCCCCAACATCTGTCGCACCAGCCATTGCCCGGCCGGCCCCAAGGCAC‑‑‑‑GCCG > 1:913434/1‑150 gGGGGTGGGGGGAAGGCTTGTCGCTGGGTGTACCGGTTGTTGTGTCTGGGCGCACTTCAAGTTCGGGCAGGCGACACAACTATTGCCCCAACATCTGTCGCACCAGCCATTGCCCGGCGTGCCTTGGGGCCG‑‑‑‑GCCGGGCAATGGCTGGTG < 1:110600/149‑1 AAGTTCGGGCAGGCGACACAACTATTGCCCCAACATCTGTCGCACCAGCCATTGCCCGGCCGGCCCCAAGGCAC‑‑‑‑GC > 1:53135/1‑76 AAGTTCGGGCAGGCGACACAACTATTGCCCCAACATCTGTCGCACCAGCCATTGCCCGGCCGGCCCCAAGGCAC‑‑‑‑GC < 2:53135/76‑1 TTGCCCGGCCGGCCCCAAGGCAC‑‑‑‑GCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGG > 1:812109/1‑109 TTGCCCGGCCGGCCCCAAGGCAC‑‑‑‑GCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGG > 1:812137/1‑109 TTGCCCGGCCGGCCCCAAGGCAC‑‑‑‑GCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGG < 2:812109/109‑1 TTGCCCGGCCGGCCCCAAGGCAC‑‑‑‑GCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGG < 2:812137/109‑1 CGGCCGGCCCCAAGGCACGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGCCCCTTAGC < 1:1108403/149‑1 CGGCCGGCCCCAAGGCACGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGCCCCTTAGC > 2:1108403/1‑149 CGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGCCCCTTAGCCTGTCACCACGCGCCGCCCCGCCGC < 1:317493/150‑1 CGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGCCCCTTAGCCTGTCACCACGCGCCGCCCCGCCGC > 2:1193386/1‑150 GACAGGCTAAGGGGCGGGGTGGGGGGAAGGCTTGTCGCTGGGTGTACCGGTTGTTGTGTCTGGGCGCACTTCAAGTTCGGGCAGGCGACACAACTATTGCCCCAACATCTGTCGCACCAGCCATTGCCCGGCCGGCCCCAAGGCAC‑‑‑‑GCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3985708‑3985558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGCCCCTTAGCCTGTCACCACGCGCCGCCCCGCCGC > NC_002947/3985582‑3985728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |