New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4395254 =	75 (1.530)	4 (0.090)	4/236	NT	5.8%	coding (564/594 nt)	PP_3871	hypothetical protein
	?	NC_002947	4395288 =	59 (1.270)					coding (530/594 nt)	PP_3871	hypothetical protein

TTGGGCCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4395409‑4395254 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaagtgTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGC  >  NC_002947/4395288‑4395351                                                                                                                                                                                                                              TTGGGCCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTC                                                                        >  1:628705/1‑150     GCCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAG                                                                    >  2:25215/1‑150     GCCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAG                                                                    >  2:25556/1‑150                                                                                                                    CCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGC  <  1:730357/105‑1                                                                                                                    CCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGC  >  2:730357/1‑105                                                                                                                     CAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCC                  <  1:490924/88‑1                                                                                                                     CAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCC                  >  2:490924/1‑88                                                                                                                                                                                                                              TTGGGCCGCAACCGCGGCAGTGAGCCCGCCGAAACCTGGCATGAATACGAGCTTGATGGCCTGCCGCCGCTGAAGGGCATCGACTTCAGCCTGGACAGCCTGGATCCGAAAGACCCCAACCACACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4395409‑4395254 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaagtgTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGC  >  NC_002947/4395288‑4395351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.