| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4683211 = | 44 (0.900) | 4 (0.100) | 4/206 | NT | 10.1% | intergenic (+24/‑197) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4683303 = | 35 (0.870) | intergenic (+116/‑105) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein | |||||
GCTTTGATCGAGTACAGTAACAGCTTGGTGGGGTTGGAAAAAGAGAGGGGCTAGGGTTTTCCAGTGGCTGGGTTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4683381‑4683211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgtgcccgcgaatgggcCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTT > NC_002947/4683303‑4683451 GCTTTGATCGAGTACAGTAACAGCTTGGTGGGGTTGGAAAAAGAGAGGGGCTAGGGTTTTCCAGTGGCTGGGTTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTGCGACACCGCCTTTGAGGACTGTGAAAAACCTCTGGGGG > 2:752789/1‑150 TTGATCGAGTACAGTAACAGCTTGGTGGGGTTGGAAAAAGAGAGGGGCTAGGGTTTTCCAGTGGCTGGGTTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGG < 1:1170539/150‑1 GATCGAGTACAGTAACAGCTTGGTGGGGTTGGAAAAAGAGAGGGGCTAGGGTTTTCCAGTGGCTGGGTTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGC < 1:811137/150‑1 TAACAGCTTGGTGGGGTTGGAAAAAGAGAGGGGCTAGGGTTTTCCAGTGGCTGGGTTTTCAGGCCCATTCGCGGGCACGCCCACTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAAT > 1:1203146/1‑150 TAACAGCTTGGTGGGGTTGGAAAAAGAGAGGGGCTAGGATTTTCCAGTGGCTGGGTTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAAT < 2:942485/150‑1 CAGCTTGGTGGGGATGGAAAAAGAGAGGGGCTAGGCGTTTCCAGTGGCTGGGGTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGG < 2:99314/150‑1 GCTAGGGTTTTCCAGTGGCTGGGTTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCG < 1:737082/107‑1 GCTAGGGTTTTCCAGTGGCTGGGTTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCG > 2:737082/1‑107 ACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGA > 2:639829/1‑150 GCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGA > 1:93517/1‑148 GCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGA < 2:93517/148‑1 GGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATT > 1:332206/1‑150 CGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCA < 1:1073276/150‑1 GTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAG > 1:163330/1‑150 CCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTG < 1:1258700/135‑1 CCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTG > 2:1258700/1‑135 CGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGG > 2:731013/1‑150 CGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCC < 2:493602/150‑1 TGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGA < 1:99314/150‑1 TGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGA < 1:639829/150‑1 GGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGC < 2:982220/150‑1 GCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAG > 2:1249720/1‑80 GCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAG < 1:1249720/80‑1 CCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTT > 2:1267430/1‑150 GCTTTGATCGAGTACAGTAACAGCTTGGTGGGGTTGGAAAAAGAGAGGGGCTAGGGTTTTCCAGTGGCTGGGTTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4683381‑4683211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgtgcccgcgaatgggcCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTGTCACTCAGCCTGGCCTTGAGCTT > NC_002947/4683303‑4683451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |