| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4683211 = | 44 (0.900) | 4 (0.100) | 4/206 | NT | 10.1% | intergenic (+24/‑197) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4683303 = | 35 (0.870) | intergenic (+116/‑105) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein | |||||
GCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGC > NC_002947/4683063‑4683359 | gCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑Gc > 1:1273775/1‑150 (MQ=255) aagctcaaggccaggctgagtgacagcaggaggggacgtatcaaatcggcatccgatccagaggcgttgggctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagg > 2:1267430‑M1/150‑150 (MQ=255) gctcaaggccaggctgagtgacagcaggaggggacgtatcaaatcggcatccgatccagaggcgttgggctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGcc < 2:982220‑M1/3‑1 (MQ=255) ttCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑Gcc < 1:912781/147‑1 (MQ=255) ttCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑Gcc > 2:912781/1‑147 (MQ=255) ttCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGAGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACCGATGCT‑GCTTTGCA‑GCCCAt > 1:66480/1‑150 (MQ=255) tcaaggccaggctgagtgacagcaggaggggacgtatcaaatcggcatccgatccagaggcgttgggctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCa < 1:639829‑M1/5‑1 (MQ=255) tcaaggccaggctgagtgacagcaggaggggacgtatcaaatcggcatccgatccagaggcgttgggctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCa < 1:99314‑M1/5‑1 (MQ=255) ctctGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTGGCA‑GCCCAt > 1:941989/1‑148 (MQ=255) ctctGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTGGCA‑GCCCAt < 2:941989/148‑1 (MQ=255) ggccaggctgagtgacagcaggaggggacgtatcaaatcggcatccgatccagaggcgttgggctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCATTcg < 2:493602‑M1/9‑1 (MQ=255) gTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCgg < 1:1202114/150‑1 (MQ=255) ccaggctgagtgacagcaggaggggacgtatcaaatcggcatccgatccagaggcgttgggctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCATTcgcg > 2:731013‑M1/140‑150 (MQ=255) ctgagtgacagcaggaggggacgtatcaaatcggcatccgatccagaggcgttgggctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCATTCGCGGGCAc > 1:163330‑M1/135‑150 (MQ=255) tgacagcaggaggggacgtatcaaatcggcatccgatccagaggcgttgggctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCATTCGCGGGCAcgcccg < 1:1073276‑M1/21‑1 (MQ=255) aGCGCTTCAAGGTGAACATTAAGCACTTCAACCGCTGGACCCAACGCATCGGCCACGCCCTCAAGCCAGGCCAGCCCCCGGCCGTCTACCTCGGGCGCTGCGTCGTTACAGTGGCT‑GCTTTGCA‑GCCCATTCGCGGGCGtgcccgcaaat < 2:441712/150‑5 (MQ=255) gcgcTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCGtgcccgcgaatg < 1:1134444/150‑6 (MQ=255) gcgcTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCa > 1:1051752/1‑150 (MQ=255) cgcTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCag > 2:640486/1‑150 (MQ=255) gcTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCaga < 1:537711/150‑1 (MQ=255) caggaggggacgtatcaaatcggcatccgatccagaggcgttgggctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCATTCGCgg < 1:1258700‑M1/12‑1 (MQ=255) caggaggggacgtatcaaatcggcatccgatccagaggcgttgggctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCATTCGCgg > 2:1258700‑M1/124‑135 (MQ=255) aaTGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGTGGCTGGGTTTTCAGGCCCATTCGCGGGCACGCCCGCTCCCACAGGt > 1:871403/1‑150 (MQ=37) aaTGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGttt > 2:88111/1‑150 (MQ=255) aaTGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GATTTCGA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGttt > 2:102534/1‑150 (MQ=255) tgtgGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGttttt < 1:901858/150‑1 (MQ=255) gtgGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTc < 1:1052828/150‑1 (MQ=255) tgGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCCTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTca > 2:543137/1‑150 (MQ=255) tGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTcc < 2:1051752/150‑1 (MQ=255) aatcggcatccgatccagaggcgttgggctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTcc > 1:332206‑M1/107‑150 (MQ=255) aaGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTTACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGttttt > 2:201494/1‑140 (MQ=255) aaGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTTACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGttttt < 1:201494/140‑1 (MQ=255) gCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTcgcg < 1:520522/113‑1 (MQ=255) gCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTcgcg > 2:520522/1‑113 (MQ=255) cTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGcc < 1:299878/150‑1 (MQ=255) aaGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGgt < 1:51648/150‑1 (MQ=255) aGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGgtg < 2:1273775/150‑1 (MQ=255) ccACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCCAAGCCGGTGTCGTACCtgtg > 2:1073276/1‑150 (MQ=255) ccACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCtgtg > 2:545489/1‑150 (MQ=255) cACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTgg < 2:133595/150‑1 (MQ=255) gCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCgg < 1:88111/150‑1 (MQ=255) ctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGc > 2:1249720‑M1/79‑80 (MQ=255) ctttgatcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGc < 1:1249720‑M1/2‑1 (MQ=255) tcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGc > 1:93517‑M1/73‑148 (MQ=255) tcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGc < 2:93517‑M1/76‑1 (MQ=255) tcgagtacagtaacagcttggtggggttggaaaaagagaggggctagggttttccagtggctgggttttcagGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGt > 2:639829‑M1/73‑150 (MQ=255) aGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAACCCCATGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATg < 1:102534/150‑1 (MQ=255) aCCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAAc < 1:763012/150‑1 (MQ=255) ccTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTcaca > 1:1263263/1‑88 (MQ=255) ccTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTcaca < 2:1263263/88‑1 (MQ=255) cTGAACGTCTACCTCGGGCGTTGAGTCGTTACAGGGGGT‑CGGCGGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCa < 1:12849/150‑1 (MQ=38) tCTACCTCGGGCGCTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCAGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTg > 2:785150/1‑150 (MQ=255) tACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGc < 1:606937/89‑1 (MQ=255) tACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGc > 2:606937/1‑89 (MQ=255) ccTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTTTCTTACCGGTTGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCACCCACTGGaaa > 1:263816/1‑150 (MQ=39) gTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGACACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGc > 1:1226032/1‑150 (MQ=255) gTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGc > 1:245007/1‑142 (MQ=255) gTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGc < 2:245007/142‑1 (MQ=255) ttACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCtt > 1:83548/1‑150 (MQ=255) cAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCttttt < 2:66480/150‑1 (MQ=255) cAGGGGCT‑GCCTTGCA‑GCCCATTCGCGCGGACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCttttt < 1:1231215/150‑1 (MQ=255) ct‑gctTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAAcc > 2:703014/1‑150 (MQ=255) ctTTGCA‑GCCCATTCGCGGTCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCcca < 2:1142146/150‑1 (MQ=255) a‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGc < 1:545489/150‑1 (MQ=255) | GCGATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCT‑GCTTTGCA‑GCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGC > NC_002947/4683063‑4683359 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |