New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5237563 =	39 (0.800)	4 (0.090)	4/232	NT	10.9%	coding (346/348 nt)	PP_5700	hypothetical protein
	?	NC_002947	5237620 =	29 (0.640)					coding (32/387 nt)	PP_4614	hypothetical protein

AGCACTGATTCGTTCGAATGGGTTGTTCATGGTCTTGCTTCTGCGGTGAGTGATGCAGAGGTTGACCGGACGTTCGCATGTTGGTTCAGCGCCATTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5237714‑5237563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgatcaATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAG  >  NC_002947/5237620‑5237767                                                                                                                                                                                                                                                                                                              AGCACTGATTCGTTCGAATGGGTTGTTCATGGTCTTGCTTCTGCGGTGAGTGATGCAGAGGTTGACCGGACGTTCGCATGTTGGTTCAGCGCCATTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGAT                                                                                                                                                        <  1:81276/150‑1   CACTGATTCGTTCGAATGGGTTGTTCATGGTCTTGCTTCTGCGGTGAGTGATGCAGAGGTTGACCGGACGTTCGCATGTTGGTTCAGCGCCATTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCA                                                                                                                                                      >  2:343945/1‑150             TTCGAATGGGTTGTTCATGGTCTTGCTTCTGCGGTGAGTGATGCAGAGGTTGACCGGACGTTCGCATGTTGGTTCAGCGCCATTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGC                                                                                                                                                            <  1:454688/134‑1             TTCGAATGGGTTGTTCATGGTCTTGCTTCTGCGGTGAGTGATGCAGAGGTTGACCGGACGTTCGCATGTTGGTTCAGCGCCATTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGC                                                                                                                                                            >  2:454688/1‑134                                                                                           GCCATTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAA                                                                                             >  2:1121614/1‑119                                                                                           GCCATTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCAAGGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAA                                                                                             <  1:1121614/119‑1                                                                                              ATTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAG                                                           >  2:523583/1‑150                                                                                                                        GGCTCAAGGCCGGGCGTTTTGCATTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGG                                 <  1:523583/150‑1                                                                                                                                                      TCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGATTCAGTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCA   <  1:415411/150‑1                                                                                                                                                       CAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCGTTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAG  <  1:618863/150‑1                                                                                                                                                                                                                                                                                                              AGCACTGATTCGTTCGAATGGGTTGTTCATGGTCTTGCTTCTGCGGTGAGTGATGCAGAGGTTGACCGGACGTTCGCATGTTGGTTCAGCGCCATTGATCGGCACAAACGAAAACGCCCGGCTCAAGGCCGGGCGTTTTGCATTGCCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5237714‑5237563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgatcaATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAG  >  NC_002947/5237620‑5237767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.