New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5237563 =	39 (0.800)	4 (0.090)	4/232	NT	10.9%	coding (346/348 nt)	PP_5700	hypothetical protein
	?	NC_002947	5237620 =	29 (0.640)					coding (32/387 nt)	PP_4614	hypothetical protein

GTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAG  >  NC_002947/5237471‑5237767                                                                                                                                                      |                                                                                                                                                    gTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCaa                                                                                                                                                     <  2:1155791/150‑1 (MQ=255)  ctgattcgttcgaatgggttgttcatggtcttgcttctgcggtgagtgatgcagaggttgaccggacgttcgcatgttggttcagcgccatTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAAt                                                                                                                                                    >  2:523583‑M1/92‑150 (MQ=255)        caccaAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCt                                                                                                                                              <  2:1118878/150‑1 (MQ=255)        caccaAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCt                                                                                                                                              <  1:1177390/150‑1 (MQ=255)                            tGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCTGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTcc                                                                                                                          <  1:922676/150‑1 (MQ=255)                               aGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGt                                                                                                                       <  1:433979/150‑1 (MQ=255)                                    ttctgcggtgagtgatgcagaggttgaccggacgttcgcatgttggttcagcgccctTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGgc                                                                                                                                                 <  1:1121614‑M1/62‑1 (MQ=255)                                    ttctgcggtgagtgatgcagaggttgaccggacgttcgcatgttggttcagcgccatTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGgc                                                                                                                                                 >  2:1121614‑M1/58‑119 (MQ=255)                                        aCGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTg                                                                                                              <  2:15737/150‑1 (MQ=255)                                             aaGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGTACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCAtca                                                                                                         <  1:31989/150‑1 (MQ=255)                                                 tGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCAtcactca                                                                                                     >  1:334442/1‑150 (MQ=255)                                                   cgcAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCAcc                                                                                                   <  2:334442/150‑1 (MQ=255)                                                          aGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCaa                                                                                                                    <  1:847244/126‑1 (MQ=255)                                                          aGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCaa                                                                                                                    >  2:847244/1‑126 (MQ=255)                                                                   ccTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCAt                                                                                   <  1:230955/150‑1 (MQ=255)                                                                     ttGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGa                                                                                 >  2:618863/1‑150 (MQ=255)                                                                     ttGAAACTGATTGACCCGGACGCCGGAGCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGa                                                                                 >  2:374882/1‑150 (MQ=255)                                                                               gTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCAtt                                                                       >  1:142760/1‑150 (MQ=255)                                                                                   cccGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTcgaa                                                                   >  2:49917/1‑150 (MQ=255)                                                                                   cccGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTcgaa                                                                   <  2:347576/150‑1 (MQ=255)                                                                                    ccGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCAtt                                                                       <  1:37595/145‑1 (MQ=255)                                                                                    ccGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCAtt                                                                       >  2:37595/1‑145 (MQ=255)                                                                                    ccGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTcgaac                                                                  <  2:975351/150‑1 (MQ=255)                                                                                        gccattgatcggcacaaacgaaaacgcccggctcaaggccgggcgttttgcattgccgatcaATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGaa                                                                                             >  2:1121614‑M2/63‑119 (MQ=255)                                                                                        gccattgatcggcacaaacgaaaacgcccggctcaaggccgggcgttttgcattgccgatcaAGGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGaa                                                                                             <  1:1121614‑M2/57‑1 (MQ=255)                                                                                        aCGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAAt                                                              <  1:49917/150‑1 (MQ=255)                                                                                           attgatcggcacaaacgaaaacgcccggctcaaggccgggcgttttgcattgccgatcaATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAg                                                           >  2:523583‑M2/60‑150 (MQ=255)                                                                                             TGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGtg                                                         >  2:343945‑M1/1‑150 (MQ=255)                                                                                               ATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGtgct                                                       <  1:81276‑M1/150‑1 (MQ=255)                                                                                                   GCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTcgaa                                                                   <  1:454688‑M1/134‑1 (MQ=255)                                                                                                   GCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTcgaa                                                                   >  2:454688‑M1/1‑134 (MQ=255)                                                                                                          aaaaCGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGcccc                                            >  1:253573/1‑150 (MQ=255)                                                                                                            aaCGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGa                                                                                       >  2:851311/1‑105 (MQ=255)                                                                                                            aaCGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGa                                                                                       <  1:851311/105‑1 (MQ=255)                                                                                                            aaCGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCg                                          >  1:1257026/1‑150 (MQ=255)                                                                                                            aaCGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCg                                          >  2:476421/1‑150 (MQ=255)                                                                                                               gCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAAt                                       >  1:895361/1‑150 (MQ=255)                                                                                                                   ggCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTc                                                                      <  2:1210954/115‑1 (MQ=255)                                                                                                                   ggCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTc                                                                      >  1:1210954/1‑115 (MQ=255)                                                                                                                    gCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCgg                                  <  2:253573/150‑1 (MQ=255)                                                                                                                     ggctcaaggccgggcgttttgcattgccgatcaATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCggg                                 <  1:523583‑M2/117‑1 (MQ=255)                                                                                                                                        gTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCggg                                 <  1:947657/131‑1 (MQ=255)                                                                                                                                        gTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCggg                                 >  2:947657/1‑131 (MQ=255)                                                                                                                                                   tcaATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGATTCAGTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGgca   <  1:415411‑M2/147‑1 (MQ=255)                                                                                                                                                    caATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCGTTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGgcag  <  1:618863‑M2/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAG  >  NC_002947/5237471‑5237767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.