| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5279912 = | 39 (0.800) | 3 (0.070) | 3/232 | NT | 7.2% | coding (83/1086 nt) | trmA | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA |
| ? | NC_002947 | 5279973 = | 41 (0.900) | coding (144/1086 nt) | trmA | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA | |||||
AATGGGGAAATCGTCGATCAGGATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5280066‑5279912‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgaGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAG > NC_002947/5279973‑5280117 AATGGGGAAATCGTCGATCAGGATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGC > 2:957038/1‑150 TGGGGAAATCGTCGATCAGGATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGC < 1:957038/150‑1 TTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGC > 1:1046737/1‑118 TTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGC < 2:1046737/118‑1 CTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTC > 1:82304/1‑150 GCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATT < 2:82304/150‑1 CGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTG > 2:1028933/1‑150 GCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAG > 2:1121370/1‑150 GCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAAC > 1:289750/1‑109 GCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAAC < 2:289750/109‑1 AATGGGGAAATCGTCGATCAGGATTGCCTTGTGCTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5280066‑5279912‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgaGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAG > NC_002947/5279973‑5280117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |