New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5279912 =	39 (0.800)	3 (0.070)	3/232	NT	7.2%	coding (83/1086 nt)	trmA	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA
	?	NC_002947	5279973 =	41 (0.900)					coding (144/1086 nt)	trmA	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA

ACTCAACTCGGCCCTGGTGATCCTTTCCATCCTGTTCGTCATCAAGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTC  >  NC_002947/5279767‑5280060                                                                                                                                                  |                                                                                                                                                     ctgccaggctgccttcaggcgcggcatcaacgcgttgatgcgttcgctggcaatggggaaatcgtcgatcaggattgccttgtgcttctcgcccggggcgaacatggcgtagtggcgctggccatcctcgcgccacaggcggaacTCGgc                                                                                                                                                  >  2:1121370‑M1/146‑150 (MQ=255)     aactcGGCCCTGGTGATCCTTTCCATCCTGTTCGTCACAACACCAGGAAGGTTCAACGCATGAGTGCTGCTCTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGgcgcgc                                                                                                                                              >  1:864416/1‑150 (MQ=255)          ggCCCTGGTGATCCTTTCCATCCTGTTCGTCATCGAGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGaa                                                                                                                                         >  2:1074323/1‑150 (MQ=255)                 cgatctcTTTCCATCCTGTTCGTCATCAAGCTAGGCTGGTTCAACGCTTGCGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTg                                                                                                                                  <  1:1244100/144‑1 (MQ=255)                    aTCCTTTCCATCCTGTTCGTCATCAAGCTAGGCTGGTTCTACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGttt                                                                                                                               <  1:67289/150‑1 (MQ=255)                                    tCGTCATCGAGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGa                                                                                                               <  1:1074323/150‑1 (MQ=255)                                      gTCATCAAGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGc                                                                                                             >  1:565688/1‑150 (MQ=255)                                       tcatcaAGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCa                                                                                                            >  2:1199804/1‑150 (MQ=255)                                          gttcgctggcaatggggaaatcgtcgatcaggattgccttgtgcttctcgcccggggcgaacatggcgtagtggcgctggccatcctcgcgccacaggcggaacTCGgc                                                                                                                                                  <  2:289750‑M1/5‑1 (MQ=255)                                          gttcgctggcaatggggaaatcgtcgatcaggattgccttgtgcttctcgcccggggcgaacatggcgtagtggcgctggccatcctcgcgccacaggcggaacTCGgc                                                                                                                                                  >  1:289750‑M1/105‑109 (MQ=255)                                            aaGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTAcc                                                                                                       <  1:492973/150‑1 (MQ=255)                                              gCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTCCGCCACCGACATGGACCCGTAAAAGACCCGGCTGCGCGAGCACCCGGCACCGTTCGGCGCGCCTGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGc                                                                                                     <  1:611129/150‑1 (MQ=255)                                                   gCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTgcg                                                                                                >  1:906904/1‑150 (MQ=255)                                                   caatggggaaatcgtcgatcaggattgccttgtgcttctcgcccggggcgaacatggcgtagtggcgctggccatcctcgcgccacaggcggaacTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTgcg                                                                                                >  2:1028933‑M1/96‑150 (MQ=255)                                                    aatggggaaatcgtcgatcaggattgccttgtgcttctcgcccggggcgaacatggcgtagtggcgctggccatcctcgcgccacaggcggaacTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTgcgc                                                                                               <  2:82304‑M1/56‑1 (MQ=255)                                                     tGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTgcgcg                                                                                              >  2:82947/1‑150 (MQ=255)                                                         tCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGa                                                                                          <  2:706559/150‑1 (MQ=255)                                                          gaaatcgtcgatcaggattgccttgtgcttctcgcccggggcgaacatggcgtagtggcgctggccatcctcgcgccacaggcggaacTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAg                                                                                         >  1:82304‑M1/89‑150 (MQ=255)                                                           aaCGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCCCCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGCCTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGt                                                                                        >  2:94471/1‑150 (MQ=255)                                                           aaCGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACNCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGt                                                                                        >  1:1183882/1‑150 (MQ=255)                                                                       ctgctTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGgc                                                                            >  1:805449/1‑150 (MQ=255)                                                                         gctTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGgcgc                                                                          >  2:605754/1‑150 (MQ=255)                                                                           tttCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGa                                                                        >  1:181601/1‑150 (MQ=255)                                                                               gACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGAt                                                                    >  2:572720/1‑150 (MQ=255)                                                                                aCCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATg                                                                   >  2:888611/1‑150 (MQ=255)                                                                                aCCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATg                                                                   >  1:142249/1‑150 (MQ=255)                                                                                   cctcctcctACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATgg                                                                  <  1:809602/148‑1 (MQ=255)                                                                                   cctcctcctACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATgg                                                                  >  2:809602/1‑148 (MQ=255)                                                                                   cctcctcctACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGcc                                                                >  1:38543/1‑150 (MQ=255)                                                                                                cACCCAGCTGGCTGCACACGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGc                                                   >  2:1277477/1‑150 (MQ=255)                                                                                                   ccAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCAt                                                >  1:1118783/1‑150 (MQ=255)                                                                                                        tGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCg                                           >  2:979894/1‑150 (MQ=255)                                                                                                           aTGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGccc                                        <  2:181601/150‑1 (MQ=255)                                                                                                              ccAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCgg                                     <  2:142249/150‑1 (MQ=255)                                                                                                              ccAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCgg                                     <  2:1183882/150‑1 (MQ=255)                                                                                                                      gCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGc                                                                                   <  2:1278352/96‑1 (MQ=255)                                                                                                                      gCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGc                                                                                   >  1:1278352/1‑96 (MQ=255)                                                                                                                        ccGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGca                           >  2:474477/1‑150 (MQ=255)                                                                                                                               cgcgAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAgcgc                                                           >  2:632924/1‑111 (MQ=255)                                                                                                                               cgcgAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAgcgc                                                           <  1:632924/111‑1 (MQ=255)                                                                                                                                      tgctgGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCgg                                     <  2:632006/126‑1 (MQ=255)                                                                                                                                      tgctgGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCgg                                     >  1:632006/1‑126 (MQ=255)                                                                                                                                      tgctgGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGa             <  1:1199804/150‑1 (MQ=255)                                                                                                                                       gctgGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGAt            <  2:805449/150‑1 (MQ=255)                                                                                                                                           gCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATcgaa        >  1:76187/1‑149 (MQ=255)                                                                                                                                                 ttCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTc  <  1:82947/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     ACTCAACTCGGCCCTGGTGATCCTTTCCATCCTGTTCGTCATCAAGCTAGGCTGGTTCAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTC  >  NC_002947/5279767‑5280060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.