| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5280967 | 34 (0.690) | 8 (0.200) | 7/200 | NT | 20.5% | intergenic (+52/+86) | trmA/pcaG | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha |
| ? | NC_002947 | = 5281003 | 35 (0.890) | intergenic (+88/+50) | trmA/pcaG | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha | |||||
CATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5280810‑5280967‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcaagcccgctccTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCGGCAATACAACGATCAGCGCCGAACCAGCAGAACCCCACTCTCCATATGGTGGGTATACGGGAACTGGTCAA < NC_002947/5281003‑5280857 CATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAG < 1:716911/150‑1 TTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCC < 2:459529/150‑1 CCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGTTTTGCTGCCCATTCGAGGGCAAGCCCGC > 2:482863/1‑150 CAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAA > 1:400459/1‑142 CAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAA < 2:400459/142‑1 TTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCTTGCCCGCgaatg < 1:897657/150‑6 GCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCC < 2:956481/118‑1 GCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCC > 1:956481/1‑118 ATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATG > 1:733389/1‑150 GTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCTGCGTACACCGACGCCGATCAATGTCG > 2:751595/1‑141 GTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCTGCGTACACCGACGCCGATCAATGTCG < 1:751595/141‑1 CCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGC < 2:733389/150‑1 CTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCG > 1:359742/1‑104 CTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCG < 2:359742/104‑1 TTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGA > 1:719832/1‑88 TTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGA < 2:719832/88‑1 GCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCG > 2:547828/1‑67 GCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCG < 1:547828/67‑1 CCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCGGCAATACAACGATCAGCGCCGAACCAGCAGAACCCCACTCTCCATATGGT > 2:697417/1‑150 CCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCGGCAATACAACGATCAGCGCCGAACCAGCAGAACCCCACTCTCCATATGGTGGGTATACGGGAACTG < 2:128527/150‑1 CCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCGGCAATACAACGATCAGCGCCGAACCAGCAGAACCCCACTCTCCATATGGTGGGTATACGGGAACTG < 2:380091/150‑1 CCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCGGCAATACAACGATCAGCGCCGAACCAGCAGAACCCCACTCTCCATATGGTGGGTATACGGGAACTG < 1:830181/150‑1 CCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCTGCAAA > 2:116046/1‑75 CCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCTGCAAA < 1:116046/75‑1 CCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATAGGCTGCAAAGCAGCCCCGGCAATACAACGATCAGCGCCGAACCAGCAGAACCCCACTCTCCATATGGTGGGTATACGGGAACTG > 2:922621/1‑150 GCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCGGCAATACAACGATCAGCGCCGAACCAGCAGAACCCCACTCTCCATATGGTGGGTATACGGGAACTGGTC < 1:95806/150‑1 TCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCGGCAATACAACGATCAGCGCCGAACCAGCAGAACCCCACTCTCCATATGGTGGGTATACGGGAACTGGTCAA > 1:482863/1‑150 CTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCaagc > 1:910741/1‑76 CTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCaagc < 2:910741/80‑5 CATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5280810‑5280967‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcaagcccgctccTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCGGCAATACAACGATCAGCGCCGAACCAGCAGAACCCCACTCTCCATATGGTGGGTATACGGGAACTGGTCAA < NC_002947/5281003‑5280857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |