| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5331738 | 42 (0.860) | 3 (0.060) | 3/240 | NT | 6.4% | intergenic (‑130/‑81) | PP_4692/dksA | aspartate/tyrosine/aromatic aminotransferase/RNA polymerase‑binding transcription factor DksA |
| ? | NC_002947 | = 5331762 | 48 (1.020) | intergenic (‑154/‑57) | PP_4692/dksA | aspartate/tyrosine/aromatic aminotransferase/RNA polymerase‑binding transcription factor DksA | |||||
GCGCACTGTAGGGTTGGGCCATGACCTTCTCTCAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5331587‑5331738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgACCGCCGGCCCTGCGACTGCGAGCCGCCGAACTTACCAGATAGATCGGGGGTGCGCTACCCCGCCCGATCCTGCTAATTGACACCGGCCTGAGCGGTACGTTCGGTGGTGTGCAGAGGTAGAATCTCCAGTTTAGACCCATTTGA < NC_002947/5331762‑5331618 GCGCACTGTAGGGTTGGGCCATGACCTTCTCTCAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGG > 1:466765/1‑150 AATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGACCGCCGGCCCTGCGACTGCGAGCCGCCGAAC < 2:931690/150‑1 TCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCG < 1:381616/89‑1 TCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCG > 2:381616/1‑89 AACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGACCGCCGGCCCTGCGACTGCGAGCCG < 1:883717/104‑1 AACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGACCGCCGGCCCTGCGACTGCGAGCCG > 2:883717/1‑104 CGGCGACCGCCGGCCCTGCGACTGCGAGCCGCCGAACTTACCAGATAGATCGGGGGTGCGCTACCCCGCCCGATCCTGCTAATTGACACCGGCCTGAGCGGTACGTTCGGTGGTGTGCAGAGGTAGAATCTCCAGTTTAGACCCATTTGA > 1:491998/1‑150 CGGCGACCGCCGGCCCTGCGACTGCGAGCCGCCGAACTTACCAGATAGATCGGG > 1:960115/1‑54 CGGCGACCGCCGGCCCTGCGACTGCGAGCCGCCGAACTTACCAGATAGATCGGG < 2:960115/54‑1 GCGCACTGTAGGGTTGGGCCATGACCTTCTCTCAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5331587‑5331738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgACCGCCGGCCCTGCGACTGCGAGCCGCCGAACTTACCAGATAGATCGGGGGTGCGCTACCCCGCCCGATCCTGCTAATTGACACCGGCCTGAGCGGTACGTTCGGTGGTGTGCAGAGGTAGAATCTCCAGTTTAGACCCATTTGA < NC_002947/5331762‑5331618 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |