New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5331738	42 (0.860)	3 (0.060)	3/240	NT	6.4%	intergenic (‑130/‑81)	PP_4692/dksA	aspartate/tyrosine/aromatic aminotransferase/RNA polymerase‑binding transcription factor DksA
	?	NC_002947	= 5331762	48 (1.020)					intergenic (‑154/‑57)	PP_4692/dksA	aspartate/tyrosine/aromatic aminotransferase/RNA polymerase‑binding transcription factor DksA

TGTAGGGTTGGGCCATGACCTTCTCTCAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAG  >  NC_002947/5331593‑5331887                                                                                                                                                  |                                                                                                                                                       tGTAGGGTTGGGCCATGACCTTCTCTCAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCtc                                                                                                                                                    <  2:508928/150‑1 (MQ=255)  gTAGGGTTGGGCCATGACCTTCTCTCAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCtcg                                                                                                                                                   >  2:1148214/1‑150 (MQ=255)   tAGGGTTGGGCCATGACCTTCTCTCAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCtcgc                                                                                                                                                  >  2:491998/1‑150 (MQ=255)      ggTTGGGCCATGACCTTCTCTCAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCtcgcagt                                                                                                                                               >  1:994162/1‑150 (MQ=255)            gCCATGACCTTCTCTCAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCtcgcagtcgagaa                                                                                                                                         <  1:369563/150‑5 (MQ=255)              cATGACCTTCTCTCAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGc                                                                                                                                       >  2:1088635/1‑150 (MQ=255)                          tcAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTcgccg                                                                                                                           >  1:491998‑M2/1‑145 (MQ=255)                             aaTGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGaccgccggccctgcgactgcgagccgccgaac                                                                                                                        <  2:931690‑M1/150‑33 (MQ=255)                                  gTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGa                                                                                                                   >  1:112763/1‑150 (MQ=255)                                      aaaCTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCAt                                                                                                               >  1:231622/1‑150 (MQ=255)                                           ggAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTgc                                                                                                         <  1:1148214/150‑1 (MQ=255)                                                  cTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGCGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTgg                                                                                                  >  2:443183/1‑150 (MQ=255)                                                    aCCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGAt                                                                                                >  2:448218/1‑150 (MQ=255)                                                      ctctGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTg                                                                                                   >  2:1271932/1‑145 (MQ=255)                                                      ctctGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTg                                                                                                   <  1:1271932/145‑1 (MQ=255)                                                        ctGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTgcg                                                                                                        >  2:1139692/1‑138 (MQ=255)                                                        ctGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTgcg                                                                                                        <  1:1139692/138‑1 (MQ=255)                                                            acacCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCa                                                                                              <  1:999833/144‑1 (MQ=255)                                                            acacCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCa                                                                                              >  2:999833/1‑144 (MQ=255)                                                                caccGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGAtgagtgag                                                                                    >  2:597688/1‑150 (MQ=255)                                                                caccGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGAtgagtgag                                                                                    >  2:1096264/1‑150 (MQ=255)                                                                     aaCGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGaccgccggccctgcgactgcgagccg                                                                                                                              >  2:883717‑M1/1‑78 (MQ=255)                                                                     aaCGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGaccgccggccctgcgactgcgagccg                                                                                                                              <  1:883717‑M1/104‑27 (MQ=255)                                                                       cGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGt                                                                             <  2:112763/150‑1 (MQ=255)                                                                           ccGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTAt                                                                         <  2:144345/150‑1 (MQ=255)                                                                            cGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTAtt                                                                        >  2:804013/1‑150 (MQ=255)                                                                            cGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTAtt                                                                        <  1:597688/150‑1 (MQ=255)                                                                            cGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTAtt                                                                        <  2:994162/150‑1 (MQ=255)                                                                                 aGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGt                                                                   <  1:448218/150‑1 (MQ=255)                                                                                  ggCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTc                                                                  <  1:1088635/150‑1 (MQ=255)                                                                                    ccGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCa                                                                <  1:1169735/150‑1 (MQ=255)                                                                                       gtgtCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCAccc                                                             >  1:942263/1‑150 (MQ=255)                                                                                          tCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAg                                                          <  1:443183/150‑1 (MQ=255)                                                                                                      aTCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAATGAGAGGCGGGCTATTCATGTCCACCCTAGAAGAGCAAAAAg                                              >  2:8481/1‑150 (MQ=255)                                                                                                                         ccccGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCAtt                                                                                                    >  1:224141/1‑77 (MQ=255)                                                                                                                         ccccGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCAtt                                                                                                    <  2:224141/77‑1 (MQ=255)                                                                                                                          cccGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTcgccg                                                                                                                           >  1:960115‑M2/1‑49 (MQ=255)                                                                                                                          cccGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTcgccg                                                                                                                           <  2:960115‑M2/54‑6 (MQ=255)                                                                                                                          cccGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGCCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATggg                          <  1:804013/150‑1 (MQ=255)                                                                                                                           ccGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATgggg                         >  1:794172/1‑150 (MQ=255)                                                                                                                                 tatctGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCAc                   <  2:1134367/150‑1 (MQ=255)                                                                                                                                  atctGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGCTAG‑CCACCGCGGCGCATTGGGTCAGAGGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCAcc                  >  1:1121272/1‑150 (MQ=255)                                                                                                                                     tGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTa               >  2:325654/1‑150 (MQ=255)                                                                                                                                      ggTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGaaaa                                                      <  2:853515/110‑1 (MQ=255)                                                                                                                                      ggTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGaaaa                                                      >  1:853515/1‑110 (MQ=255)                                                                                                                                        tAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCa                                       <  2:870010/123‑1 (MQ=255)                                                                                                                                        tAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCa                                       >  1:870010/1‑123 (MQ=255)                                                                                                                                           gTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTcgccgaacttaccagatagatcgggggtgcgctaccccgcccgatcctgctaattgacaccggcctgagcggtacgttcggtggtgtgcagaggtagaatctccagtttagacccatt          <  2:931690‑M2/150‑119 (MQ=255)                                                                                                                                           gTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGga         >  1:715664/1‑150 (MQ=255)                                                                                                                                            ttCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGCGAGGCGGTCGATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGgag        >  1:477322/1‑150 (MQ=255)                                                                                                                                            ttCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGgag        >  2:545227/1‑150 (MQ=255)                                                                                                                                              cGGCGaccgccggccctgcgactgcgagccgccgaacttaccagatagatcgggggtgcgctaccccgcccgatcctgctaattgacaccggcctgagcggtacgttcggtggtgtgcagaggtagaatctccagtttagacccatttga       >  1:491998‑M1/1‑5 (MQ=255)                                                                                                                                              cGGCGaccgccggccctgcgactgcgagccgccgaacttaccagatagatcggg                                                                                                       >  1:960115‑M1/1‑5 (MQ=255)                                                                                                                                              cGGCGaccgccggccctgcgactgcgagccgccgaacttaccagatagatcggg                                                                                                       <  2:960115‑M1/54‑50 (MQ=255)                                                                                                                                                 cggcTCGCAGTCGCAGGGCCGGCGGTcgccgaacttaccagatagatcgggggtgcgctaccccgcccgatcctgctaattgacaccggcctgagcggtacgtt                                                  >  2:883717‑M2/1‑26 (MQ=255)                                                                                                                                                 cggcTCGCAGTCGCAGGGCCGGCGGTcgccgaacttaccagatagatcgggggtgcgctaccccgcccgatcctgctaattgacaccggcctgagcggtacgtt                                                  <  1:883717‑M2/104‑79 (MQ=255)                                                                                                                                                  ggcTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAg  <  1:1096264/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                       TGTAGGGTTGGGCCATGACCTTCTCTCAAATGGGTCTAAACTGGAGATTCTACCTCTGCACACCACCGAACGTACCGCTCAGGCCGGTGTCAATTAGCAGGATCGGGCGGGGTAGCGCACCCCCGATCTATCTGGTAAGTTCGGCGGCTCGCAGTCGCAGGGCCGGCGGTCGCCGGAGATGGAGCATC‑CTGCGCATTGGATCAGATGAGTGAGAGGCGGTCTATTCATGTCCACCCTAGAAAAGCAAAAAGCCAACCAGAATCTTTATGGGGTTGCACCCTATCAGGAGACCAAG  >  NC_002947/5331593‑5331887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.