New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5443256	60 (1.220)	4 (0.090)	4/238	NT	6.6%	coding (1572/1989 nt)	PP_4781	sensor histidine kinase
	?	NC_002947	= 5443262	56 (1.200)					coding (1566/1989 nt)	PP_4781	sensor histidine kinase

ACGGTAAAGGTCAACGCCAGATCATCCGGCCCCACCCGGCGGCCGCGCACCTGGATCATCACACCGCCCTGATGGGTGAACTTCAAACCGTTGTCCACCAGGCAACCCAGGCAGTGCGCCAGCTTCTGCCCGTCACCGAGCAACCCGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5443104‑5443256 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcCGACCTGCCGGACGGGTTGCTCGGTGACGGGCAGAAGCTGGCGCACTGCCTGGGTTGCCTGGTGGACAACGGTTTGAAGTTCACCCATCAGGGCGGTGTGATGATCCAGGTGCGCGGCCGCCGGGTGGGGCCGGATGATCTGGCGTTG  <  NC_002947/5443262‑5443115                                                                                                                                                                                                                                                                                                               ACGGTAAAGGTCAACGCCAGATCATCCGGCCCCACCCGGCGGCCGCGCACCTGGATCATCACACCGCCCTGATGGGTGAACTTCAAACCGTTGTCCACCAGGCAACCCAGGCAGTGCGCCAGCTTCTGCCCGTCACCGAGCAACCCGTCC                                                                                                                                                         <  2:746700/150‑1                                                                                                                              CTGCCCGTCACCGAGCAACCCGTCCGGCAGGTCGGCCGGACGGGTTGCTCGGTGACGGGCAGAAGCTGGCGCACTGCCTGGGTTGCCTG                                                                                         >  1:704235/1‑89                                                                                                                              CTGCCCGTCACCGAGCAACCCGTCCGGCAGGTCGGCCGGACGGGTTGCTCGGTGACGGGCAGAAGCTGGCGCACTGCCTGGGTTGCCTG                                                                                         <  2:704235/89‑1                                                                                                                                   CGTCACCGAGCAACCCGTCCGGCAGGTCGGCCGGACGGGTTGCTCGGTGACGGGCAGAAGCTGGCGCACTGCCTGGGTTGCCTGGTGGACAACGGTTTGAAGTTCACCCATCAGGGCGGTGTGATGATCCAG                                         <  1:92674/132‑1                                                                                                                                   CGTCACCGAGCAACCCGTCCGGCAGGTCGGCCGGACGGGTTGCTCGGTGACGGGCAGAAGCTGGCGCACTGCCTGGGTTGCCTGGTGGACAACGGTTTGAAGTTCACCCATCAGGGCGGTGTGATGATCCAG                                         >  2:92674/1‑132                                                                                                                                                    TCCGGCCGACCTGCCGGACGGGTTGCTCGGTGACGGGCAGAAGCTGGCGCACTGCCTGGGTTGCCTGGTGGACAACGGTTTGAAGTTCACCCATCAGGGCGGTGTGATGATCCAGGTGCGCGGCCGCCGGGTGGGGCCGGATGATCTGGC      >  1:818799/1‑150                                                                                                                                                       GGCCGACCTGCCGGACGGGTTGCTCGGTGACGGGCAGAAGCTGGCGCACTGCCTGGGTTGCCTGGTGGACAACGGTTTGAAGTTCACCCATCAGGGCGGTGTGATGATCCATGTGCGCGGCCGCCGGGTGGGGCCGGATGATCTGGCGTT   <  1:267050/150‑1                                                                                                                                                       GGCCGACCTGCCGGACGGGTTGCTCGGTGACGGGCAGAAGCTGGCGCACTGCCTGGGTTGCCTGGTGGACAACGGTTTGAAGTTCACCCATCAGGGCGGTGTGATGATCCAGGTGCGCGGCCGCCGGGTGGGGCCGGATGATCTGGCGTT   <  1:565142/150‑1                                                                                                                                                       GGCCGACCTGCCGGACGGGTTGCTCGGTGACGGGCAGAAGCTGGCGCACTGCCTGGGTTGCCTGGTGGACAACGGTTTGAAGTTCACCCATCAGGGCGGTGTGATGATCCAGGTGCGCGGCCGCCGGGTGGGGCCGGATGATCTGGCGTT   >  1:71442/1‑150                                                                                                                                                        GCCGACCTGCCGGACGGGTTGCTCGGTGACGGGCAGAAGCTGGCGCACTGCCTGGGTTGCCTGGTGGACAACGGTTTGAAGTTCACCCATCAGGGCGGTGTGATGATCCAGGTGCGCGGCCGCCGGGTGGGGCCGGATGATCTGGCGTTG  >  2:142642/1‑150                                                                                                                                                                                                                                                                                                               ACGGTAAAGGTCAACGCCAGATCATCCGGCCCCACCCGGCGGCCGCGCACCTGGATCATCACACCGCCCTGATGGGTGAACTTCAAACCGTTGTCCACCAGGCAACCCAGGCAGTGCGCCAGCTTCTGCCCGTCACCGAGCAACCCGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5443104‑5443256 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcCGACCTGCCGGACGGGTTGCTCGGTGACGGGCAGAAGCTGGCGCACTGCCTGGGTTGCCTGGTGGACAACGGTTTGAAGTTCACCCATCAGGGCGGTGTGATGATCCAGGTGCGCGGCCGCCGGGTGGGGCCGGATGATCTGGCGTTG  <  NC_002947/5443262‑5443115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.