| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5519873 = | 64 (1.300) | 5 (0.110) | 4/230 | NT | 7.2% | intergenic (‑96/‑130) | PP_4852/PP_4853 | AraC family transcriptional regulator/DMT superfamily permease |
| ? | NC_002947 | 5519958 = | 70 (1.550) | intergenic (‑181/‑45) | PP_4852/PP_4853 | AraC family transcriptional regulator/DMT superfamily permease | |||||
CAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5520014‑5519873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGC > NC_002947/5519958‑5520101 CAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAG > 1:1148225/1‑141CAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAG < 2:1148225/141‑1 CTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTC > 2:187751/1‑150 CTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTC > 2:361085/1‑150 TTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCA > 1:1143818/1‑150 TGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATACTGTGGGGACGGGGAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATC > 1:1121566/1‑150 TCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGG < 2:1121566/150‑1 GAGCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGA < 1:187751/150‑1 CCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGAT > 1:1076886/1‑150 CCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCC > 1:932642/1‑124 CCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCC < 2:932642/124‑1 CCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCACCAGGGAGTACCCTGCTGCATGAACTACCTGGACCCCCTCACCGCCAGCCTCATCTGGGCCGGCAACACCGTGGTGACCAAGATGTCCGCCGGTACCATCCACCCTGCGGAGAT > 1:425187/1‑150 CGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGC < 2:904248/150‑1 CGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCT < 1:1096495/46‑1 CGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCT > 2:1096495/1‑46 CAGGTAGTTCATGCAGCAGGGTACTCGCTGGGGGCTGGAATGGGGCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5520014‑5519873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGC > NC_002947/5519958‑5520101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |