New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5609699	42 (0.860)	6 (0.130)	5/240	NT	12.2%	coding (867/906 nt)	PP_4929	LysR family transcriptional regulator
	?	NC_002947	= 5609710	46 (0.980)					coding (856/906 nt)	PP_4929	LysR family transcriptional regulator

GCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5609560‑5609699 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccGCGCAGTGGCTGGCCGAGCGCT  <  NC_002947/5609710‑5609689                                                                                                                                                                    GCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGAAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGTTAAGTCTACCAGATCGCGCGCAGGTGCACTGCAAAGTGTCCGGCCGCGCAGTGGg              >  2:383221/1‑149             CGCGCGCGCAGATACAGGCGCAGCGCAACCAGAGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCCCGGCCGCGCAGTGGCTGGCCGAGCGCT  <  1:383221/150‑1                                                                              AGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCGCGCAGTGGCTGGCCGA       <  1:939878/80‑1                                                                              AGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCGCGCAGTGGCTGGCCGA       >  2:939878/1‑80                                                                                TTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCGCGCAGTGGCTGGCCGA       <  1:260096/78‑1                                                                                TTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCGCGCAGTGGCTGGCCGA       >  2:260096/1‑78                                                                                                                                                                    GCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5609560‑5609699 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccGCGCAGTGGCTGGCCGAGCGCT  <  NC_002947/5609710‑5609689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.