New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5609699 | 42 (0.860) | 6 (0.130) | 5/240 | NT | 12.2% | coding (867/906 nt) | PP_4929 | LysR family transcriptional regulator |
? | NC_002947 | = 5609710 | 46 (0.980) | coding (856/906 nt) | PP_4929 | LysR family transcriptional regulator |
TGGCCGTAGGCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGC > NC_002947/5609551‑5609847 | tGGCCGTAGGCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGgcca < 1:657221/150‑1 (MQ=255) tGGCCGTAGGCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGgcca > 1:1273564/1‑150 (MQ=255) tAGGCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACt > 2:1153837/1‑150 (MQ=255) gCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGAAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGTTAAGTCTACCAGATCGCGCGCAGGTGCACTGCAAAGTGTCCGGCCgcgcagtggg > 2:383221‑M1/1‑140 (MQ=255) cgcgcgcgcAGATACAGGCGCAGCGCAACCAGAGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCCCGGCCgcgcagtggctggccgagcgct < 1:383221‑M1/150‑23 (MQ=255) aGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGGCCAGAGGTTCATCgcggc > 1:817488/1‑150 (MQ=255) gcagcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCgcca > 2:261541/1‑150 (MQ=255) gcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCa < 1:810656/128‑1 (MQ=255) gcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCa > 2:810656/1‑128 (MQ=255) gcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCgccaggc > 2:1075706/1‑150 (MQ=255) ggTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCcgg < 1:1075706/150‑1 (MQ=255) gTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGGCTACCCGATGGCGCGAGGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCcggc < 1:1230167/150‑1 (MQ=255) aGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGgccgcc > 1:706259/1‑150 (MQ=255) aGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTc < 2:203442/150‑1 (MQ=255) taGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGt > 1:1189884/1‑150 (MQ=255) agagagTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTCCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTc < 2:389322/150‑1 (MQ=255) gagagTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGTCCGGCGGCCGCCAGTCGCTGTcc > 2:1284498/1‑150 (MQ=255) agagTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGGCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCa < 2:817488/150‑1 (MQ=255) agTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCgcgcagtggctggccga < 1:939878‑M1/80‑18 (MQ=255) agTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCgcgcagtggctggccga > 2:939878‑M1/1‑63 (MQ=255) ttCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCgcgcagtggctggccga < 1:260096‑M1/78‑18 (MQ=255) ttCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCgcgcagtggctggccga > 2:260096‑M1/1‑61 (MQ=255) ttCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTc > 1:286067/1‑150 (MQ=255) tGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGAc > 1:982887/1‑150 (MQ=255) aTGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTACCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCAtgt > 2:683171/1‑150 (MQ=255) tAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTgg < 2:1273564/150‑1 (MQ=255) tCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAgg > 2:651452/1‑67 (MQ=255) tCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAgg < 1:651452/67‑1 (MQ=255) cTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGt > 2:667428/1‑146 (MQ=255) cTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAAGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCGGGt < 1:667428/146‑1 (MQ=255) tACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCTGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGcc > 1:186027/1‑141 (MQ=255) tACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCTGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGcc < 2:186027/141‑1 (MQ=255) tACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTc > 2:1035550/1‑150 (MQ=255) aCCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCg > 1:1220969/1‑150 (MQ=255) cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGc > 2:389045/1‑85 (MQ=255) cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGc < 1:389045/85‑1 (MQ=255) cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGc < 2:1178197/99‑1 (MQ=255) cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGCCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGc > 1:1178197/1‑99 (MQ=255) tCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGcc < 2:505876/95‑1 (MQ=255) tCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGcc > 1:505876/1‑95 (MQ=255) cgAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGcacc < 1:1035550/150‑1 (MQ=255) gAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGcacca > 2:1208341/1‑150 (MQ=255) gTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTgc < 2:259036/121‑1 (MQ=255) gTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTgc > 1:259036/1‑121 (MQ=255) gTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATg > 1:1188128/1‑150 (MQ=255) gCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGcc > 2:65672/1‑150 (MQ=255) aCTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCgg > 1:93608/1‑150 (MQ=255) tGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAg > 2:568832/1‑124 (MQ=255) tGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAg < 1:568832/124‑1 (MQ=255) tGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCgggg < 2:706259/150‑1 (MQ=255) aGCGCTCGGCCAGCCACTGCGCggccgggcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaactctctataccttgctgtttcacctgggcctgcctctggttgcgctgcgcctgtatctgcgcgcgcg < 1:383221‑M2/150‑129 (MQ=255) tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaact > 2:939878‑M2/1‑17 (MQ=255) tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaact < 1:939878‑M2/80‑64 (MQ=255) tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaa > 2:260096‑M2/1‑17 (MQ=255) tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaa < 1:260096‑M2/78‑62 (MQ=255) ccagccaCTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGc > 1:1280348/1‑150 (MQ=255) | TGGCCGTAGGCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGC > NC_002947/5609551‑5609847 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |