New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5627662	49 (1.000)	3 (0.060)	3/238	NT	5.0%	intergenic (‑110/+83)	PP_4944/rlmJ	carbamoyltransferase/23S rRNA (adenine(2030)‑N(6))‑methyltransferase
	?	NC_002947	= 5627735	67 (1.440)					intergenic (‑183/+10)	PP_4944/rlmJ	carbamoyltransferase/23S rRNA (adenine(2030)‑N(6))‑methyltransferase

CATGGCTAAGGGCGCCGGACAGGCCAAGAATCGTCAATGCCAAGGGATTAGCCTCTTCATTCGGTAAAAATGCGCCAGCGGCCTCTTGGGCGGATGGCGGCTAAAGGGCGGGATTATAACGCAAACATTGGAGGCACACCGCCCCCTTGTAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5627510‑5627662 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTACAAGGGGGCGGTGTGCCTCCAATGTTTGCGTTATAATCCCGCCCTTTAGCCGCCATCCGCCCAAGAGGCCGC  <  NC_002947/5627735‑5627587                                                                                                                                                                                                                                                                                                                CATGGCTAAGGGCGCCGGACAGGCCAAGAATCGTCAATGCCAAGGGATTAGCCTCTTCATTCGGTAAAAATGCGCCAGCGGCCTCTTGGGCGGATGGCGGCTAAAGGGCGGGATTATAACGCAAACATTGGAGGCACACCGCCCCCTTGT                                                                                                                                                          >  2:537147/1‑150    GGCTAAGGGCGCCGGACAGGCCAAGAATCGTCAATGCCAAGGGATTAGCCTCTTCATTCGGTAAAAATGCGCCAGCGGCCTCTTGGGCGGATGGCGGCTAAAGGGCGGGATTATAACGCAAACATTGGAGGCACACCGCCCCCTTGTAGG                                                                                                                                                       >  2:488523/1‑150                                                             TCGGTAAAAATGCGCCAGCGGCCTCTTGGGCGGATGGCGGCTAAAGGGCGGGATTATAACGCAAACATTGGAGGCACACCGCCCCCTTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTT                                                                                              >  2:113974/1‑150                                                                       TGCGCCAGCGGCCTCTTGGGCGGATGGCGGCTAAAGGGCGGGATTATAACGCAAACATTGGAGGCACACCGCCCCCTTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAA                                                                                    <  2:1254908/150‑1                                                                               CGGCCTCTTGGGCGGATGGCGGCTAAAGGGCGGGATTATAACGCAAACATTGGAGGCACACCGCCCCCTTGTAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCC                                                                            <  1:113974/150‑1                                                                                                                                                      TAGGCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTACAAGGGGGCGGTGTGCCTCCAATGTTTGCGTTATAATCCCGCCCTTTAGCCGCCATCCGCCCAAGAGGC     <  1:775856/150‑1                                                                                                                                                         GCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTACAAGGGGGCGGTGTGCCTCCAATGTTTGCGTTATAATCACGCCCTTTAGCCGCCATCCGCCCAAGAGGCCGC  >  1:866279/1‑150                                                                                                                                                                                                                                                                                                                CATGGCTAAGGGCGCCGGACAGGCCAAGAATCGTCAATGCCAAGGGATTAGCCTCTTCATTCGGTAAAAATGCGCCAGCGGCCTCTTGGGCGGATGGCGGCTAAAGGGCGGGATTATAACGCAAACATTGGAGGCACACCGCCCCCTTGTAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5627510‑5627662 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggCGCGGGTTTGCCCGCGAACACCGGCTACGCCGGTGCCATCCACCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTACAAGGGGGCGGTGTGCCTCCAATGTTTGCGTTATAATCCCGCCCTTTAGCCGCCATCCGCCCAAGAGGCCGC  <  NC_002947/5627735‑5627587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.