New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5735744	51 (1.040)	5 (0.110)	5/240	NT	8.9%	intergenic (‑25/+84)	hutH/hutU	histidine ammonia‑lyase/urocanate hydratase
	?	NC_002947	= 5735771	53 (1.130)					intergenic (‑52/+57)	hutH/hutU	histidine ammonia‑lyase/urocanate hydratase

ACACAGGCGACGCTGGCGTCGATGGCCGGTGCGGCGCTGGCATCCAGTTGCAGGCGCACGGGCGCGGCATGGATCGCGCGCAGCTGGGCCAGGGTCAGGGTGCCAGGCTTGAGGGTGAGTTCGGTCACGTTACTACTCCAAATCGCGTGGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5735592‑5735744 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcGCGCAGGTACCCACAAGCGGG‑‑CCTGCGGCTCCACGCGATTTGGAGTAGTAACGTGACCGAACTCACCCTCAAGCCTGGCACCCTGACCCTGGCCCAGCTGCGCGCGATCCATGCCGCGCCCGTGCGCCTGCAACTGGATGCCAGCG  <  NC_002947/5735771‑5735626                                                                                                                                                                                                                                                                                                               ACACAGGCGACGCTGGCGTCGATGGCCGGTGCGGCGCTGGCATCCAGTTGCAGGCGCACGGGCGCGGCATGGATCGCGCGCAGCTGGGCCAGGGTCAGGGTGCCAGGCTTGAGGGTGAGTTCGGTCACGTTACTACTCCAAATCGCGTGG                                                                                                                                                         >  2:983147/1‑150                                      TGGCATCCAGTTGCAGGCGCACGGGCGCGGCATGGATCGCGCGCAGCTGGGCCAGGGTCAGGGTGCCAGGCTTGAGGGTGAGTTCGGTCACGTTACTACTCCAAATCGCGTGGAGCGCGCAGGTACCCACAAGCGGG‑‑CCTGCGGCTCCAC                                                                                                                  <  1:101778/150‑1                                          ATCCAGTTGCAGGCGCACGGGCGCGGCATGGATCGCGCGCAGCTGGGCCAGGGTCAGGGTGCCAGGCTTGAGGGTGAGTTCGGTCACGTTACTACTCCAAATCGCGTGGAGCGCGCAGGTACCCACAAGCGGG‑‑CCTGCGGCTCCACGCGA                                                                                                              <  1:735345/150‑1                                                              GCGCGGCATGGATAGCGCGCAGCTGGGCCAGGGTCAGGGTGCCAGGCTTGAGGGTGAGTTCGGTCACGTTACTACTCCAAATCGCGTGGAGCGCGCAGGTACCCACAAGCGGG‑‑CCTGCGGCTCCACG                                                                                                                 >  1:1107145/1‑127                                                              GCGCGGCATGGATAGCGCGCAGCTGGGCCAGGGTCAGGGTGCCAGGCTTGAGGGTGAGTTCGGTCACGTTACTACTCCAAATCGCGTGGAGCGCGCAGGTACCCACAAGCGGG‑‑CCTGCGGCTCCACG                                                                                                                 <  2:1107145/127‑1                                                                                                                  GGTGAGTTCGGTCACGTTACTACTCCAAATCGCGTG                                                                                                                                                          >  1:1272077/1‑36                                                                                                                  GGTGAGTTCGGTCACGTTACTACTCCAAATCGCGTG                                                                                                                                                          <  2:1272077/36‑1                                                                                                                                      TACTCCAAATCGCGTGGAGC‑CGCAGG‑‑CCCGCTTGTGGGTACCTGCGGCTCCACGCGATTTGGAGTAGTAACGTGACCGAACTCACCCTCAAGCCTGGCACCCTGACCCTGGCCCAGCTGCGCGCGATCCATGCCGCGCCCGTGCGCCTGC                 >  1:528965/1‑150                                                                                                                                                      GAGCGCGCAGGTACCCACAAGCGGG‑‑CCTGCGGCTCCACGCGATTTGGAGTAGTAACGTGACCGAACTCACCCTCAAGCCTGGCACCCTGACCCTGGCCCAGCTGCGCGCGATCCATGCCGCGCCCGTGCGCCTGCAACTGGATGCCAGCG  >  1:915929/1‑150                                                                                                                                                      GAGCGCGCAGGTACCCACAAGCGGG‑‑CCTGCGGCTCCACGCGATTTGGAGTAGTAACGTGACCGAACTCACCCTCAAGCCTGGCACCCTGACCCTGGCCCAGCTGCGCGCGATCCATGCCGCGCCCGTGCGCCTGCAACTGGATGCCAGCG  >  1:983147/1‑150                                                                                                                                                                                                                                                                                                               ACACAGGCGACGCTGGCGTCGATGGCCGGTGCGGCGCTGGCATCCAGTTGCAGGCGCACGGGCGCGGCATGGATCGCGCGCAGCTGGGCCAGGGTCAGGGTGCCAGGCTTGAGGGTGAGTTCGGTCACGTTACTACTCCAAATCGCGTGGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5735592‑5735744 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcGCGCAGGTACCCACAAGCGGG‑‑CCTGCGGCTCCACGCGATTTGGAGTAGTAACGTGACCGAACTCACCCTCAAGCCTGGCACCCTGACCCTGGCCCAGCTGCGCGCGATCCATGCCGCGCCCGTGCGCCTGCAACTGGATGCCAGCG  <  NC_002947/5735771‑5735626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.