| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6061542 = | 65 (1.330) | 7 (0.150) | 7/238 | NT | 9.7% | intergenic (‑119/+69) | hupA/alkT | DNA‑binding protein HU‑alpha/rubredoxin‑NAD(+) reductase |
| ? | NC_002947 | 6061566 = | 69 (1.480) | intergenic (‑143/+45) | hupA/alkT | DNA‑binding protein HU‑alpha/rubredoxin‑NAD(+) reductase | |||||
TACGCCCTGACCGGAGCGGCGGTGATGGAGAAGCTGGCGCTGAATCGTCAGTTGCCACCGGTTATGGCGTAAATAGCGCGCGTTCTGTCGGATTTATCCTGTTGTTGCCTGCACAATGGCCGC‑CCAGATA‑CTGGCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6061682‑6061542‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTAGCCCAGCAGCTTGCCGTCGGCATCAAGGCAGA > NC_002947/6061566‑6061714 TACGCCCTGACCGGAGCGGCGGTGATGGAGAAGCTGGCGCTGAATCGTCAGTTGCCACCGGTTATGGCGTAAATAGCGCGCGTTCTGTCGGATTTATCCTGTTGTTGCCTGCACAATGGCCGCGCCAG‑TATCTGG‑GCGGCCATTGTGCAG < 1:462855/150‑1 TGACCGGAGCGGCGGTGATGGAGAAGCTGGCGCTGAATCGTCAGTTGCCACCGGTTATGGCGTAAATAGCGCGCGTTCTGTCGGATTTATCCTGTTGTTGCCTGCACAATGGCCGCGCCAG‑TATCTGG‑GCGGCCATTGTGCA < 1:770349/142‑1 TGACCGGAGCGGCGGTGATGGAGAAGCTGGCGCTGAATCGTCAGTTGCCACCGGTTATGGCGTAAATAGCGCGCGTTCTGTCGGATTTATCCTGTTGTTGCCTGCACAATGGCCGCGCCAG‑TATCTGG‑GCGGCCATTGTGCA > 2:770349/1‑142 GCGGCGGTGATGGAGAAGCTGGCGCTGAATCGTCAGTTGCCACCGGTTATGGCGTAAATAGCGCGCGTTCTGTCGGATTTATCCTGTTGTTGCCTGCACAATGGCCGCGCCAGTAT‑CTGG‑GCGGCCATTGTGCAGGCAACAACAGGATAA < 1:794480/150‑1 CCACCGGTTATGGCGTAAATAGCGCGCGTTCTGTCGGATTTATCCTGTTGTTGCCTGCACAATGGCCGCGCCAGTAT‑CTGG‑GCGGCCATTGTGC > 1:610616/1‑94 CCACCGGTTATGGCGTAAATAGCGCGCGTTCTGTCGGATTTATCCTGTTGTTGCCTGCACAATGGCCGCGCCAGTAT‑CTGG‑GCGGCCATTGTGC < 2:610616/94‑1 AATGGCCGC‑CCAGATA‑CTGGCGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTAGCCCAG > 2:809256/1‑150 GCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTAGCCCAGCAGCTTGCCGTCGGCATCAAGGCA > 2:1050377/1‑150 GCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTAGTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTAGCCCAGCAGCTTGCCGTCGGCATCAAGGCA < 1:179857/150‑1 CATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAGCTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTAGCCCAGCAGCTTGCCGTCGGCATCAAGGCAGA > 1:1026525/1‑150 TACGCCCTGACCGGAGCGGCGGTGATGGAGAAGCTGGCGCTGAATCGTCAGTTGCCACCGGTTATGGCGTAAATAGCGCGCGTTCTGTCGGATTTATCCTGTTGTTGCCTGCACAATGGCCGC‑CCAGATA‑CTGGCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6061682‑6061542‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTAGCCCAGCAGCTTGCCGTCGGCATCAAGGCAGA > NC_002947/6061566‑6061714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |