New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 6061542 =65 (1.330)7 (0.150) 7/238 NT 9.7% intergenic (‑119/+69) hupA/alkT DNA‑binding protein HU‑alpha/rubredoxin‑NAD(+) reductase
?NC_002947 6061566 = 69 (1.480)intergenic (‑143/+45) hupA/alkT DNA‑binding protein HU‑alpha/rubredoxin‑NAD(+) reductase

CGATGACGGCGGCGAGTTCTGGTTTGCGCATAGTGAAGCCTCTTTGACGGAATTCTTGTTGTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTAGCCCA  >  NC_002947/6061393‑6061687
                                                                                                                                                     |                                                                                                                                                   
tctgccttgatgccgacggcaagctgctgggctacgccctgaccggagcggcggtgatggagaagctggcgctgaatcgtcagctgccaccggttatggcgtaaatagcgcgcgttctgtcggatttatcctgttgttgcctgcacaatg                                                                                                                                                     >  1:1026525‑M1/150‑150 (MQ=255)
  tgccttgatgccgacggcaagctgctgggctacgccctgaccggagcggcggtgatggagaagctggcgctgaatcgtcagttgccaccggttatggcgtaactagcgcgcgttctgtcggatttatcctgttgttgcctgcacaatGGc                                                                                                                                                   <  1:179857‑M1/3‑1 (MQ=255)
  tgccttgatgccgacggcaagctgctgggctacgccctgaccggagcggcggtgatggagaagctggcgctgaatcgtcagttgccaccggttatggcgtaaatagcgcgcgttctgtcggatttatcctgttgttgcctgcacaatGGc                                                                                                                                                   >  2:1050377‑M1/148‑150 (MQ=255)
                  cTGGTTTGCGCATAGTGAAGCCTCTTTGACGGAATTCTTGTTGTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTggg                                                                                                                                 <  2:1253013/150‑1 (MQ=255)
                   tGGTTTGCGCATAGTGAAGCCTCTTTGACGGAATTCTTGTTGTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGggc                                                                                                                                <  1:1061623/150‑1 (MQ=255)
                      tttGCGCATAGTGAAGCCTATTTGACGGAATTCTTGTTGTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGggcggc                                                                                                                             <  2:842994/150‑1 (MQ=255)
                          ctgggctacgccctgaccggagcggcggtgatggagaagctggcgctgaatcgtcagttgccaccggttatggcgtaaatagcgcgcgttctgtcggatttatcctgttgttgcctgcacaatGGCCGCGCCAGTATCTGGGCGGCCAtt                                                                                                                         >  2:809256‑M1/124‑150 (MQ=255)
                           gcATAGTGAAGCCTCTTTGACGGAATTCTTGTTGTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATtg                                                                                                                        >  1:604063/1‑150 (MQ=255)
                                gTGAAGCCTCTTTGACGGAATTCTTGTTGTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAg                                                                                                                   <  2:1194620/150‑1 (MQ=255)
                                         ctTTGACGGAATTCTTGTTGTTATGCCGTGCTGCCTCTGGGGGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAacaaca                                                                                                          <  2:607828/150‑1 (MQ=255)
                                          tttGACGGAATTCTTGTTGTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAg                                                                                                         >  1:1000932/1‑150 (MQ=255)
                                            tGACGGAATTCTTGTTGTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGCGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGa                                                                                                       <  2:535553/150‑1 (MQ=255)
                                              aCGGAATTCTTGTTGTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATa                                                                                                     >  2:429922/1‑150 (MQ=255)
                                                       ttgttgTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACa                                                                                            <  2:604063/150‑1 (MQ=255)
                                                       ttgttgTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACa                                                                                            >  2:1161934/1‑150 (MQ=255)
                                                        tgttgtTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAg                                                                                           >  1:934698/1‑150 (MQ=255)
                                                           tgttATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAAc                                                                                        <  2:934698/150‑1 (MQ=255)
                                                             ttATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAAcgc                                                                                      >  1:99678/1‑150 (MQ=255)
                                                               aTGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAAcgcgc                                                                                    <  2:1000932/150‑1 (MQ=255)
                                                                tGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCGATTGTGCAGGCAACAGCGGGATAAATCCGCCAGAAcgcgca                                                                                   >  2:271787/1‑149 (MQ=255)
                                                                tGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGCCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAAcgcgcg                                                                                   >  2:790699/1‑150 (MQ=255)
                                                                 gCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACgcgcgc                                                                                  <  1:738249/150‑1 (MQ=255)
                                                                       ctgcCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTa                                                                            >  2:883793/1‑150 (MQ=255)
                                                                         gcCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACg                                                                          >  1:427230/1‑150 (MQ=255)
                                                                         gcCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACg                                                                          >  2:47062/1‑150 (MQ=255)
                                                                            tctGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGa                                                                                              >  2:77763/1‑127 (MQ=255)
                                                                            tctGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGa                                                                                              <  1:77763/127‑1 (MQ=255)
                                                                               gggAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATaa                                                                    >  1:127672/1‑150 (MQ=255)
                                                                                   gcagcGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCgg                                                                <  1:429922/150‑1 (MQ=255)
                                                                                     agcGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTg                                                              >  2:939251/1‑150 (MQ=255)
                                                                                     agcGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTg                                                              >  2:53669/1‑150 (MQ=255)
                                                                                     agcGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTg                                                              >  1:334231/1‑150 (MQ=255)
                                                                                            aaGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGa                                                                                              >  2:1090001/1‑111 (MQ=255)
                                                                                            aaGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGa                                                                                              <  1:1090001/111‑1 (MQ=255)
                                                                                            aaGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTg                                                       >  2:494129/1‑150 (MQ=255)
                                                                                            aaGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTg                                                       >  1:839699/1‑150 (MQ=255)
                                                                                              ggCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGAc                                                     <  1:47062/150‑1 (MQ=255)
                                                                                              ggCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAAATCATGTGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGAc                                                     >  2:179857/1‑150 (MQ=255)
                                                                                               gCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCTCTATTTACGCCATAACCg                                                                 <  1:1239912/137‑1 (MQ=255)
                                                                                               gCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCTCTATTTACGCCATAACCg                                                                 >  2:1239912/1‑137 (MQ=255)
                                                                                                cACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGa                                                   <  1:53669/150‑1 (MQ=255)
                                                                                                cACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGa                                                   <  2:1159446/150‑1 (MQ=255)
                                                                                                     cAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGAt                                                                                                      >  2:533343/1‑94 (MQ=255)
                                                                                                     cAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGAt                                                                                                      <  1:533343/94‑1 (MQ=255)
                                                                                                        gCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAgcgc                                           <  2:334231/150‑1 (MQ=255)
                                                                                                          tctAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCa                                         >  2:138025/1‑150 (MQ=255)
                                                                                                          tctAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCa                                         <  2:839699/150‑1 (MQ=255)
                                                                                                            tAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGc                                       <  1:494129/150‑1 (MQ=255)
                                                                                                              aTCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGa                                                      >  2:1044717/1‑133 (MQ=255)
                                                                                                              aTCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGa                                                      <  1:1044717/133‑1 (MQ=255)
                                                                                                                 tGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAAc                                                                   >  2:886628/1‑117 (MQ=255)
                                                                                                                 tGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAAc                                                                   <  1:886628/117‑1 (MQ=255)
                                                                                                                    ggCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCAt                               <  1:138025/150‑1 (MQ=255)
                                                                                                                     gCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATc                              >  1:1169888/1‑150 (MQ=255)
                                                                                                                       aGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCAc                            <  2:508970/150‑1 (MQ=255)
                                                                                                                        gACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAAc                                                         >  2:865471/1‑120 (MQ=255)
                                                                                                                        gACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAAc                                                         <  1:865471/120‑1 (MQ=255)
                                                                                                                         aCGGGAGTGAGAATGGCACGAGCTCAGGGGCTGCGCCAGGATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCAccg                          >  1:102536/1‑150 (MQ=255)
                                                                                                                         aCGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCAccg                          >  2:485410/1‑150 (MQ=255)
                                                                                                                             ttatcctgttgttgcctgcacaatGGCCGCCCAGATACTGGCGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACcgccgc                      <  1:794480‑M1/126‑1 (MQ=255)
                                                                                                                              aGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCtt                                     <  1:370329/134‑1 (MQ=255)
                                                                                                                              aGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCtt                                     >  2:370329/1‑134 (MQ=255)
                                                                                                                                tGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAAt                                                                                                  >  2:466080/1‑71 (MQ=255)
                                                                                                                                tGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAAt                                                                                                  <  1:466080/71‑1 (MQ=255)
                                                                                                                                    aaTGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTc               <  1:485410/150‑1 (MQ=255)
                                                                                                                                        gCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAggg           >  1:1273889/1‑150 (MQ=255)
                                                                                                                                         cACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGc          >  1:615750/1‑150 (MQ=255)
                                                                                                                                            gAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTa       <  2:1273889/150‑1 (MQ=255)
                                                                                                                                            ctgcacaatGGCCGCCCAGATACTGGCGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTa       <  1:462855‑M1/141‑1 (MQ=255)
                                                                                                                                             tgcacaatGGCCGCCCAGATACTGGCGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCa              <  1:770349‑M1/134‑1 (MQ=255)
                                                                                                                                             tgcacaatGGCCGCCCAGATACTGGCGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCa              >  2:770349‑M1/9‑142 (MQ=255)
                                                                                                                                             aGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTAg      <  1:1161934/150‑1 (MQ=255)
                                                                                                                                              gcacaatGGCCGCCCAGATACTGGCGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTgg                                                             >  1:610616‑M1/8‑94 (MQ=255)
                                                                                                                                              gcacaatGGCCGCCCAGATACTGGCGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTgg                                                             <  2:610616‑M1/87‑1 (MQ=255)
                                                                                                                                               cTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTAGcc    >  1:663354/1‑150 (MQ=255)
                                                                                                                                                 cAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTAGCCca  <  1:939251/150‑1 (MQ=255)
                                                                                                                                                  aGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGa                                                      >  2:17337/1‑97 (MQ=255)
                                                                                                                                                  aGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGa                                                      <  1:17337/97‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
CGATGACGGCGGCGAGTTCTGGTTTGCGCATAGTGAAGCCTCTTTGACGGAATTCTTGTTGTTATGCCGTGCTGCCTCTGGGAGCAGCGCTCAAGGCACCGCAGGCTCTAATCTGCGGCAGACGGGAGTGAGAATGGCACGAGCTCAGGGGCCGCGCCAGTATCTGGGCGGCCATTGTGCAGGCAACAACAGGATAAATCCGACAGAACGCGCGCTATTTACGCCATAACCGGTGGCAACTGACGATTCAGCGCCAGCTTCTCCATCACCGCCGCTCCGGTCAGGGCGTAGCCCA  >  NC_002947/6061393‑6061687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.