New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	360248 =	52 (1.060)	4 (0.090)	4/238	NT	7.2%	intergenic (‑27/‑105)	PP_0299/PP_0300	hypothetical protein/metallopeptidase
	?	NC_002947	360274 =	53 (1.140)					intergenic (‑53/‑79)	PP_0299/PP_0300	hypothetical protein/metallopeptidase

GACAGAATGTCGCCATGGCTGCTTTGGCTAAGAACAGGTCGTTTACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGCATGAACATGAACCGGGAACAATTGAAATTCTGCTT  >  NC_002947/360101‑360387                                                                                                                                                    |                                                                                                                                                gACAGAATGTCGCCATGGCTGCTTTGGCTAAGAACAGGTCGTTTACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGccc                                                                                                                                               >  2:1097423/1‑150 (MQ=255)    cgtcctccacaaagaaacacagtacctagcaagcagaatttcaattgttcccggttcatgttcatgctccagatatcggagccttactggaccatgcgcatcgattcccaacaactgacataaataacagttgcaaaaaaataaCCCCgg                                                                                                                                            >  1:25911‑M1/145‑150 (MQ=255)    catcctccaaaaagaaacacagcacctagcaagcagaattacaattgatcccggttcatgttcatgatccagatatcggagccttactggaccatgcgcatagattcttaacaactgacataaataaaaaaaaaaaaaaaataaCCCCgg                                                                                                                                            >  2:832334‑M1/145‑150 (MQ=255)            gCCATGGCTGCTTTGGCTAAGAACAGGTCGTTTACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCAc                                                                                                                                  >  2:283908/1‑150 (MQ=255)              cATGGCTGCCTTGGCTCAGAACAGGCAGCTTGCGACTGAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACg‑g                                                                                                                               >  2:791062/1‑150 (MQ=255)                  gctgctTTGGCTAAGAACAGGTCGTTTACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTc                                                                                                                           >  2:1012197/1‑150 (MQ=255)                  gctgctTTGGCTAAGAACAGGTAGCAGCCCACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTc                                                                                                                           <  1:245/150‑1 (MQ=255)                       tttGGCTAAGAACAGGTCGTTTACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCggg                                                                                                                      <  2:999142/150‑1 (MQ=255)                         gcacctaggaagcagaatttcaattggtcccggttcatgttcatgctccagatatcggagccttactggaccatgcgcatcgattcccaacaactgacataaataacagttgcaaaaaaataaCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGt                                                                                                                    >  1:494759‑M1/124‑150 (MQ=255)                                gAACAGGTCGTTTACGACTAAATCCCCTGCCAGGTAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTAttttt                                                                                                             >  2:176941/1‑150 (MQ=255)                                  aCAGGTCGTTTACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGTATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTAttttttt                                                                                                           <  1:214365/150‑1 (MQ=255)                                  aCAGGTCGTTTACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTAttttttt                                                                                                           <  1:678519/150‑1 (MQ=255)                                     ggTCGTTTACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCa                                                                                                        >  1:845234/1‑150 (MQ=255)                                      gTCGTTTACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCaa                                                                                                       >  1:786009/1‑150 (MQ=255)                                       tCGTTTACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAAc                                                                                                      >  1:737736/1‑150 (MQ=255)                                          tttACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGcccc                                                                                                                                              >  1:984668/1‑110 (MQ=255)                                          tttACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGcccc                                                                                                                                              <  2:984668/110‑1 (MQ=255)                                           ttACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACAAGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGtt                                                                                                  <  2:768046/150‑1 (MQ=255)                                            tACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCTCGGAAGTGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGtta                                                                                                 <  1:1043028/150‑1 (MQ=255)                                                    aaTCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTc                                                                                         >  1:910561/1‑150 (MQ=255)                                                     aTCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCa                                                                                        <  2:786009/150‑1 (MQ=255)                                                           tGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAgttgtt                                                                                  <  1:1097423/150‑1 (MQ=255)                                                                ggCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGaa                                                                             <  1:794097/150‑1 (MQ=255)                                                                         gcacACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAgt                                                                                      >  2:1134024/1‑132 (MQ=255)                                                                         gcacACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAgt                                                                                      <  1:1134024/132‑1 (MQ=255)                                                                         gcacACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATgcgc                                                                    <  1:176941/150‑1 (MQ=255)                                                                                 aaGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTAttttttt                                                                                                           >  1:199277/1‑103 (MQ=255)                                                                                 aaGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTAttttttt                                                                                                           <  2:199277/103‑1 (MQ=255)                                                                                  aGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAg                                                           <  2:910561/150‑1 (MQ=255)                                                                                   gCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGt                                                          <  2:1015407/150‑1 (MQ=255)                                                                                    ccATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACt                                                                                                     <  1:1084605/106‑1 (MQ=255)                                                                                    ccATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACt                                                                                                     >  2:1084605/1‑106 (MQ=255)                                                                                    ccATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTa                                                         >  1:620169/1‑150 (MQ=255)                                                                                      aTTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAg                                                       <  2:980631/150‑1 (MQ=255)                                                                                             gTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑Ga                                               >  2:636402/1‑150 (MQ=255)                                                                                             gTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGAGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCAAG‑GCTACCCGGAGGTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCGTGGTCCAGTAAGGCTCC‑Ga                                               >  1:1119664/1‑150 (MQ=255)                                                                                                     ggTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGa                                       <  1:1012197/150‑1 (MQ=255)                                                                                                           gTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCCAGATATC‑GGAGcctta                                 >  1:500944/1‑146 (MQ=255)                                                                                                            tCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCCAGATATC‑GGAGccttac                                <  2:500944/150‑6 (MQ=255)                                                                                                            tCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGcatgaa                                >  2:86473/1‑150 (MQ=255)                                                                                                                ccTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGcatgaacatg                            <  1:86473/150‑1 (MQ=255)                                                                                                                caacaactgacataaataacagttgcaaaaaaataaCCCCGGGAA‑GC‑CGTGAGCTACC‑GGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGcatgaa                                <  2:165621‑M1/110‑1 (MQ=255)                                                                                                                caacaactgacataaataacagttgcaaaaaaataaCCCCGG‑GAAGC‑CGTGAGCTACC‑GGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGcatgaa                                >  1:165621‑M1/37‑146 (MQ=255)                                                                                                                  tCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGt                                                                                          >  2:884663/1‑87 (MQ=255)                                                                                                                  tCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGt                                                                                          <  1:884663/87‑1 (MQ=255)                                                                                                                      tCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATgc                                                                      >  1:1196185/1‑103 (MQ=255)                                                                                                                      tCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATgc                                                                      <  2:1196185/103‑1 (MQ=255)                                                                                                                       tgacataaataacagttgcaaaaaaataaCCCCGG‑GAAGC‑CGTG‑AGCTACCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGCATGAACATGAACCggg                     <  2:351058‑M1/121‑1 (MQ=255)                                                                                                                          acGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGCATGAACATGAACCGGGAAc                  >  2:816860/1‑150 (MQ=255)                                                                                                                            gCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTAttttt                                                                                                             >  2:235618/1‑58 (MQ=255)                                                                                                                            gCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTAttttt                                                                                                             <  1:235618/58‑1 (MQ=255)                                                                                                                                tGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTcc                                                                                                                          >  2:692382/1‑41 (MQ=255)                                                                                                                                tGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTcc                                                                                                                          <  1:692382/41‑1 (MQ=255)                                                                                                                                tGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGTAGCATGAACATGAACCGGGAACAATTGa            <  1:214231/150‑1 (MQ=255)                                                                                                                                tGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGCATGAACATGAACCGGGAACAATTGa            <  2:620169/150‑1 (MQ=255)                                                                                                                                 ggATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGCATGAACATGAACCGGGAACAATTGaa           <  1:636402/150‑1 (MQ=255)                                                                                                                                      ttGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGca                                    <  1:172101/120‑1 (MQ=255)                                                                                                                                      ttGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGca                                    >  2:172101/1‑120 (MQ=255)                                                                                                                                         ctcgctcTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTcc                                                  >  1:883984/1‑104 (MQ=255)                                                                                                                                         ctcgctcTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTcc                                                  <  2:883984/104‑1 (MQ=255)                                                                                                                                          tcgctcTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACGGTTATTTATGTCAGTTGTTGGAAGTCGATGCGCATGGTAAAATGCGCACGC‑GATAGGCGGAGCATGAACATGAACCGGGGCCAATTTAAATTCtgctt  >  1:607233/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                GACAGAATGTCGCCATGGCTGCTTTGGCTAAGAACAGGTCGTTTACGACTAAATCCCCTGCCAGGCAAGCACGCACACTGAAGCCATTCACGGTACAGAGGGTTTGGTCACCCTCGCTCACACGCAGTGGATGTTGCTCGCTCTTGGCCCCGG‑TA‑GCTCACG‑GCTTCCCGGGGTTATTTTTTTGCAACTGTTATTTATGTCAGTTGTTGGGAATCGATGCGCATGGTCCAGTAAGGCTCC‑GATATCTGGAGCATGAACATGAACCGGGAACAATTGAAATTCTGCTT  >  NC_002947/360101‑360387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.