New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 556297	40 (0.820)	5 (0.110)	5/230	NT	11.1%	coding (231/315 nt)	rplX	50S ribosomal protein L24
	?	NC_002947	= 556309	43 (0.950)					coding (243/315 nt)	rplX	50S ribosomal protein L24

GTCTGGTTATCGGTGGCGTGAACCTGGTCAAGCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAATCGCTCCTAAG  >  NC_002947/556161‑556446                                                                                                                                         |                                                                                                                                                      gTCTGGTTATCGGTGGCGTGAACCTGGTCAAGCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCg                                                                                                                                          <  1:1276055‑M2/150‑2 (MQ=255)          tCGGTGGCGTGAATCTGGTCAAGCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACgcggtcagccttgttggtttca                                                                                                                                 <  2:95787‑M1/150‑23 (MQ=255)            ggTGGCGTGAACCTGGTCAAGCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACcaacaa                                                                                                                                                     >  2:717497/1‑128 (MQ=255)            ggTGGCGTGAACCTGGTCAAGCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACcaacaa                                                                                                                                                     <  1:717497/128‑1 (MQ=255)            ggTGGCGTGAACCTGGTCAAGCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCaaa                                                                                                                               <  2:1244501/150‑1 (MQ=255)                gCGTGAACCTGGTCAAGCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTag                                                                                                                           <  2:1276055/150‑1 (MQ=255)                                gCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCgttggtttc                                                                                                                                  >  2:379422‑M2/1‑118 (MQ=255)                                gCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCgttggtttc                                                                                                                                  <  1:379422‑M2/127‑10 (MQ=255)                                gCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAAt                                                                                                           >  2:1005676/1‑150 (MQ=255)                                gCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAAt                                                                                                           >  1:432580/1‑150 (MQ=255)                                  gTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGTCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTc                                                                                                         >  2:1108887/1‑150 (MQ=255)                                    cATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCgt                                                                                                       <  2:432580/150‑1 (MQ=255)                                         cAAGCCTAACCCGGTGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGTCTCTGCACGCTTTCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTTGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCtt                                                                                                  >  2:155216/1‑150 (MQ=255)                                         cAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACgcggtcagccttgttggtttcaccgt                                                                                                                             >  2:206786‑M1/1‑97 (MQ=255)                                         cAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACgcggtcagccttgttggtttcaccgt                                                                                                                             <  1:206786‑M1/123‑27 (MQ=255)                                         cAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACAAACAAGGCTGACCGCATTGGTTTAGAAGTAGAAGACGGTAAAAAAATTCGTGTCtt                                                                                                  >  2:302234/1‑150 (MQ=255)                                              cTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGt                                                                                             >  2:171777/1‑150 (MQ=255)                                              cTAACCCGATGGCGGGCCTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGt                                                                                             >  2:657313/1‑150 (MQ=255)                                                 aaccGATGGAGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCATCTGCACGCTTCCAACGTTGCCATATTCAACAGTAAAAACAACAAGGCTGACCGCGTTGGTTTCAAAGTAAAAAAAAAAAAAAAAATTCGTGTCTTCAAGTCGa                                                                                          <  2:427543/148‑1 (MQ=255)                                                 aCCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGa                                                                                          <  1:167319/150‑1 (MQ=255)                                                   ccGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGAcc                                                                                        >  2:670725/1‑150 (MQ=255)                                                     gATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCGCGACACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCTCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTTTTTTCAAGTCGAccaa                                                                                      >  2:313638/1‑148 (MQ=255)                                                         gcgggcgTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCaaaaa                                                                                  <  2:54699/150‑1 (MQ=255)                                                              cgTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGt                                                                             <  1:670725/150‑1 (MQ=255)                                                                   aGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCaa                                                                                               >  2:273743/1‑127 (MQ=255)                                                                   aGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCaa                                                                                               <  1:273743/127‑1 (MQ=255)                                                                   aGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATg                                                                        >  1:221715/1‑150 (MQ=255)                                                                   aGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATg                                                                        <  1:1108887/150‑1 (MQ=255)                                                                    gggCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGc                                                                       <  1:657313/150‑1 (MQ=255)                                                                              gtcgAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCaaaaa                                                                                  >  1:419909/1‑129 (MQ=255)                                                                              gtcgAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCaaaaa                                                                                  <  2:419909/129‑1 (MQ=255)                                                                                 gagaAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCgtgt                                                                                                     >  1:293387/1‑107 (MQ=255)                                                                                 gagaAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCgtgt                                                                                                     <  2:293387/107‑1 (MQ=255)                                                                                 gagaAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTa                                                          >  1:13563/1‑150 (MQ=255)                                                                                   gaaagaaGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAgg                                                        >  1:74803/1‑150 (MQ=255)                                                                                       gaagCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGATAAAAAAATTCGTGTCTTCAAGTCGAccc                                                                                       >  2:1190119/1‑115 (MQ=255)                                                                                       gaagCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGATAAAAAAATTCGTGTCTTCAAGTCGAccc                                                                                       <  1:1190119/115‑1 (MQ=255)                                                                                        aagCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTagaa                                                   <  2:74803/150‑1 (MQ=255)                                                                                              ctctGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCAt                                             >  2:1065719/1‑150 (MQ=255)                                                                                                    aCGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAg                                                                                 <  1:1020962/108‑1 (MQ=255)                                                                                                    aCGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAg                                                                                 >  2:1020962/1‑108 (MQ=255)                                                                                                      gCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGAc                                     >  2:1220923/1‑150 (MQ=255)                                                                                                                     aTCTTCAACGGTGAAACCAACgcggtcagccttgttggt                                                                                                                                     <  2:802067‑M1/39‑19 (MQ=255)                                                                                                                     aTCTTCAACGGTGAAACCAACgcggtcagccttgttggt                                                                                                                                     >  1:802067‑M1/1‑21 (MQ=255)                                                                                                                     aTCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTAcc                      >  1:842823/1‑150 (MQ=255)                                                                                                                          cAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAAc                 <  2:842823/150‑1 (MQ=255)                                                                                                                           aaCGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAgg                                                        >  2:270084/1‑110 (MQ=255)                                                                                                                           aaCGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAgg                                                        <  1:270084/110‑1 (MQ=255)                                                                                                                            aCGGTGAAACCAACAAGGCTGACCGCgttggtttcaccgttgaagatggcaacgttggaagcgtgcagaggcgcttctttctcgacgataccgccctgtacgcccgccatcgggttaggcttg                                          >  2:206786‑M2/1‑26 (MQ=255)                                                                                                                            aCGGTGAAACCAACAAGGCTGACCGCgttggtttcaccgttgaagatggcaacgttggaagcgtgcagaggcgcttctttctcgacgataccgccctgtacgcccgccatcgggttaggcttg                                          <  1:206786‑M2/123‑98 (MQ=255)                                                                                                                              ggggAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGaaa             <  1:146977/147‑1 (MQ=255)                                                                                                                               gTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAAt            <  1:155216/150‑1 (MQ=255)                                                                                                                                tGAAACCAACAAGGCTGACCGCgttggtttcaccgttgaagatggcaacgttggaagcgtgcagaggcgcttctttctcgacgataccgccctgtacgcccgccatcgggttaggcttggtatgacgcttgaccagattcacgccaccga           <  2:95787‑M2/150‑129 (MQ=255)                                                                                                                                 gAAACCAACgcggtcagccttgttggtttcaccgttgaagatggcaacgttggaagcgtgcagaggcgcttctttctcgacgataccgccctgtacgcccgccatcgggttaggcttggtatgacgc                                 >  2:379422‑M1/1‑9 (MQ=255)                                                                                                                                 gAAACCAACgcggtcagccttgttggtttcaccgttgaagatggcaacgttggaagcgtgcagaggcgcttctttctcgacgataccgccctgtacgcccgccatcgggttaggcttggtatgacgc                                 <  1:379422‑M1/127‑119 (MQ=255)                                                                                                                                    aCCAACAAGGCTGACCGCgttggtttcaccgttgaagat                                                                                                                      >  1:802067‑M2/1‑18 (MQ=255)                                                                                                                                    aCCAACAAGGCTGACCGCgttggtttcaccgttgaagat                                                                                                                      <  2:802067‑M2/39‑22 (MQ=255)                                                                                                                                        acaaGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTTAAAGAGATTGACCGGAACGAAATCGCTCCTaa   <  2:13563/150‑1 (MQ=255)                                                                                                                                         cgcggtcagccttgttggtttcaccgttgaagatggcaacgttggaagcgtgcagaggcgcttctttctcgacgataccgccctgtacgcccgccatcgggttaggcttggtatgacgcttgaccaggttcacgccaccgataaccagac  <  1:1276055‑M1/150‑150 (MQ=255)                                                                                                                                         caaGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAATCGCTCCTAAg  >  1:1079595/1‑150 (MQ=255)                                                                                                                                         |                                                                                                                                                      GTCTGGTTATCGGTGGCGTGAACCTGGTCAAGCGTCATACCAAGCCTAACCCGATGGCGGGCGTACAGGGCGGTATCGTCGAGAAAGAAGCGCCTCTGCACGCTTCCAACGTTGCCATCTTCAACGGTGAAACCAACAAGGCTGACCGCGTTGGTTTCAAAGTAGAAGACGGTAAAAAAATTCGTGTCTTCAAGTCGACCCAAAAAGCGGTTGATGCTTGAACACTGCTAGGTAGAAGACCATGGCACGACTGAAAGAGATTTACCGGAACGAAATCGCTCCTAAG  >  NC_002947/556161‑556446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.