New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 901777	36 (0.730)	5 (0.110)	5/238	NT	11.6%	coding (163/963 nt)	trxB	thioredoxin reductase
	?	NC_002947	= 901795	42 (0.900)					coding (181/963 nt)	trxB	thioredoxin reductase

GTCATTCGCGCGTCATCATTCTCGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTAC  >  NC_002947/901628‑901926                                                                                                                                                           |                                                                                                                                                      gTCATTCGCGCGTCATCATTCTCGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGAGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGG                                                                                                                                                       >  2:218710‑M1/1‑150 (MQ=255)  tCATTCGCGCGTCATCATTCTCGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCggg                                                                                                                                                      >  2:1048865/1‑150 (MQ=255)         cgcgTCATCATTCTCGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGAcccc                                                                                                                                               <  2:371095/150‑1 (MQ=255)                    tctcGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGAc                                                                                                                                    >  1:131930‑M2/1‑149 (MQ=255)                    tctcGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGAc                                                                                                                                    <  2:272755‑M2/150‑2 (MQ=255)                      tcGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGAccg                                                                                                                                  >  2:724892‑M2/1‑147 (MQ=255)                               gCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGctc                                                                                                                         <  1:574146/150‑1 (MQ=255)                                cccTGCCGATTACAGCGCTTCGGTGTATGCCGCCCAAGGCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAACTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGctct                                                                                                                        <  1:1031470/150‑1 (MQ=255)                                  cTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGa                                                                                                                      <  1:1048865/150‑1 (MQ=255)                                    gCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATg                                                                                                                    >  1:435600/1‑150 (MQ=255)                                     ccGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGc                                                                                                                   >  1:1152482/1‑150 (MQ=255)                                        gTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGc                                                                                                                                         <  2:894583/125‑1 (MQ=255)                                        gTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGc                                                                                                                                         >  1:894583/1‑125 (MQ=255)                                           aCAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCCGGtcaggccgtgggggtcgcccggccagttgtcgacttc                                                                                                                  <  2:819259‑M1/150‑38 (MQ=255)                                           aCAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGTGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTa                                                                                                             <  1:1222913/150‑1 (MQ=255)                                                      gtgtATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCAc                                                                                                  >  1:304950/1‑150 (MQ=255)                                                             ccgccCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGAt                                                                                                                     <  2:797858/124‑1 (MQ=255)                                                             ccgccCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGGCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGAt                                                                                                                     >  1:797858/1‑124 (MQ=255)                                                                cccGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCGTCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGtt                                                                                        <  1:719777/150‑1 (MQ=255)                                                                  cGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGtttt                                                                                      <  1:272755/150‑1 (MQ=255)                                                                              aaGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATc                                                                          >  1:384257/1‑150 (MQ=255)                                                                                gCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCa                                                                                                                  >  2:885041/1‑108 (MQ=255)                                                                                gCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCa                                                                                                                  <  1:885041/108‑1 (MQ=255)                                                                                     tgctgATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGtcaggccgtgggggtcgcccggccagttgtc                                                                                                                        >  2:339218‑M1/1‑66 (MQ=255)                                                                                     tgctgATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGtcaggccgtgggggtcgcccggccagttgtc                                                                                                                        <  1:339218‑M1/97‑32 (MQ=255)                                                                                      gctgATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGa                                                                  <  2:435600/150‑1 (MQ=255)                                                                                       ctgATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTgc                                                                                    <  2:882569/131‑2 (MQ=255)                                                                                       ctgATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGa                                                                                    >  1:882569/1‑131 (MQ=255)                                                                                       ctgATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGAc                                                                 <  2:384257/150‑1 (MQ=255)                                                                                         gATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGtcaggccgtgggggtcgcccggcca                                                                                                                              >  2:53214‑M1/1‑62 (MQ=255)                                                                                         gATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGtcaggccgtgggggtcgcccggcca                                                                                                                              <  1:53214‑M1/87‑26 (MQ=255)                                                                                           tCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACcaca                                                             >  2:289319/1‑150 (MQ=255)                                                                                               cGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCaa                                                         <  1:94839/150‑1 (MQ=255)                                                                                                                 ccAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCcaa                                       >  2:698678/1‑150 (MQ=255)                                                                                                                  cAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCcaac                                      >  2:452767/1‑150 (MQ=255)                                                                                                                   aGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCcaaca                                     >  2:1079681/1‑150 (MQ=255)                                                                                                                          caccaccaccGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGcc                                                                                               >  1:595188/1‑85 (MQ=255)                                                                                                                          caccaccaccGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGcc                                                                                               <  2:595188/85‑1 (MQ=255)                                                                                                                              accaccGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGCCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTTAAACCGAAAGAGTCTTCGACCACATCAACGCTGTCGACCTGGCCCACAAGCGCTTCAcc                          >  2:293300/1‑150 (MQ=255)                                                                                                                               ccaccGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGAc                                                                 <  2:264635/110‑1 (MQ=255)                                                                                                                               ccaccGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGAc                                                                 >  1:264635/1‑110 (MQ=255)                                                                                                                                  ccGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAAACGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGc                      >  2:918613/1‑150 (MQ=255)                                                                                                                                    gAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGAccggcccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatcagcagcggcttgaggttggcacgggcggcatacaccgcagcgctgt                    <  2:819259‑M2/150‑114 (MQ=255)                                                                                                                                     aaGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAgg                   <  1:218710/150‑1 (MQ=255)                                                                                                                                        tCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTg                >  1:182803/1‑150 (MQ=255)                                                                                                                                          gACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGAccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatcagca                                                                   >  2:339218‑M2/1‑31 (MQ=255)                                                                                                                                          gACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGAccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatcagca                                                                   <  1:339218‑M2/97‑67 (MQ=255)                                                                                                                                             aaCT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGc           >  2:430494/1‑150 (MQ=255)                                                                                                                                              aCT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCAAATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCg          <  1:293300/150‑1 (MQ=255)                                                                                                                                                t‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGAccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatc                                                                       >  2:53214‑M2/1‑25 (MQ=255)                                                                                                                                                t‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGAccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatc                                                                       <  1:53214‑M2/87‑63 (MQ=255)                                                                                                                                                        ccGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAg     <  2:304950/150‑1 (MQ=255)                                                                                                                                                         cGGtcaggccgtgggggtcgcccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatcagcagcggcttgaggttggcacgggcggcatacaccgcagcgctgtaaccggcagggccggaaccga    >  2:724892‑M1/1‑3 (MQ=255)                                                                                                                                                         cGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGt    >  1:522752/1‑150 (MQ=255)                                                                                                                                                           gtcaggccgtgggggtcgcccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatcagcagcggcttgaggttggcacgggcggcatacaccgcagcgctgtaaccggcagggccggaaccgaga  <  2:272755‑M1/150‑150 (MQ=255)                                                                                                                                                           gtcaggccgtgggggtcgcccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatcagcagcggcttgaggttggcacgggcggcatacaccgcagcgctgtaaccggcagggccggaaccgaga  >  1:131930‑M1/1‑1 (MQ=255)                                                                                                                                                           |                                                                                                                                                      GTCATTCGCGCGTCATCATTCTCGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACT‑‑‑‑‑GGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTAC  >  NC_002947/901628‑901926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.