New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1380493 =	43 (0.880)	3 (0.070)	3/226	NT	8.0%	intergenic (‑213/+49)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
	?	NC_002947	1380532 =	30 (0.680)					intergenic (‑252/+10)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met

AAACGTATCCAATGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGT  >  NC_002947/1380345‑1380642                                                                                                                                                     |                                                                                                                                                        aaaCGTATCCAATGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGCCTTGGCATGAGGGGAGGGAAAATCGATGCGACGAAAGTCAGGGAGGTATAAAGcaa                                                                                                                                                        >  2:303490/1‑150 (MQ=255)  aaCGTATCCAATGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGcaac                                                                                                                                                       <  2:646983/150‑1 (MQ=255)        tcaaagcctagcgcttgacatacaaaccacacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAAccc                                                                                                                                                 <  1:433123‑M1/9‑1 (MQ=255)          aaagcctagcgcttgacatacaaaccacacactgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCcg                                                                                                                                               <  2:778270‑M1/11‑1 (MQ=255)            aTGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTAAGGGCGGAATAAAGCCACgaaacgaaag                                                                                                                                             >  2:1035789/1‑143 (MQ=255)                    ccGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGTTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGGATAAAGCAACAAACCACGCGCTGCtttt                                                                                                                                     >  1:621026/1‑150 (MQ=255)                     cGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTa                                                                                                                                    >  1:104807/1‑150 (MQ=255)                          tCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAg                                                                                                                              >  2:484605/1‑150 (MQ=255)                          tCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAg                                                                                                                              >  1:5394/1‑150 (MQ=255)                             ggCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCg                                                                                                                          <  1:216613/150‑1 (MQ=255)                              gCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACGAACCCCGCGCTGCTTTTACA‑CAG‑GCgg                                                                                                                         >  1:1016171/1‑150 (MQ=255)                               cGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCggg                                                                                                                        <  2:5394/150‑1 (MQ=255)                                 tttGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGt                                                                                                                      <  1:362948/150‑1 (MQ=255)                                 tttGAAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGt                                                                                                                      <  2:1207185/150‑1 (MQ=255)                                     cAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGcaac                                                                                                                                                       >  2:1179558/1‑115 (MQ=255)                                     cAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGcaac                                                                                                                                                       <  1:1179558/115‑1 (MQ=255)                                     cAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGt                                                                                                                  >  1:57365/1‑150 (MQ=255)                                      aGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGtt                                                                                                                 >  2:1052403/1‑150 (MQ=255)                                      aGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGtt                                                                                                                 <  1:305139/150‑1 (MQ=255)                                        actgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagaa                                                                                                                                                        >  2:686995‑M1/110‑111 (MQ=255)                                        actgtagaatccgccccactgacgcgggatggagcagcctggtagctcgtcgggctcataacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagaa                                                                                                                                                        <  1:686995‑M1/2‑1 (MQ=255)                                                    gTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGCCGAATATGGt                                                                                                   >  2:255716/1‑150 (MQ=255)                                                     ttAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGtt                                                                                                  >  1:501935/1‑150 (MQ=255)                                                     ttAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGtt                                                                                                  <  2:57365/150‑1 (MQ=255)                                                        aaGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCg                                                                                               <  2:501935/150‑1 (MQ=255)                                                               ttCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCg                                                                                        >  1:837788/1‑150 (MQ=255)                                                                   tCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGAtt                                                                                    <  2:104807/150‑1 (MQ=255)                                                                        ggCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAc                                                                               <  1:1052403/150‑1 (MQ=255)                                                                         gcgcGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTAca‑ca                                                                                                                               >  1:248179/4‑102 (MQ=255)                                                                         gCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTAca‑ca                                                                                                                               <  2:248179/102‑1 (MQ=255)                                                                         gCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAcc                                                                              <  2:837788/150‑1 (MQ=255)                                                                             gACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACcgacg                                                                          >  1:61815/1‑150 (MQ=255)                                                                                     aaGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCgg                                                                  <  1:475399/150‑1 (MQ=255)                                                                                       gCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGt                                                                <  1:370625/150‑1 (MQ=255)                                                                                         cggCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTa                                                              >  1:506025/3‑150 (MQ=255)                                                                                          tGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTAt                                                             >  1:912214/1‑150 (MQ=255)                                                                                                   gCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACGAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCcgac                                                    <  2:1016171/150‑1 (MQ=255)                                                                                                   aacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTg                                                                                                                   >  1:382838‑M1/51‑87 (MQ=255)                                                                                                   aacccgaaggtcgtcggttcaaatccggctcccgcaaccatattcgtcagAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTg                                                                                                                   <  2:382838‑M1/37‑1 (MQ=255)                                                                                                    cATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCcgacg                                                   >  2:433123/1‑150 (MQ=255)                                                                                                     aTGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGAATACAGCAACAAACACCGGGCTGCTTTTACA‑CAG‑GCGGGGTTTGATGAGACGAATAGGGTTGCGGGGGCCGGATTTGAACCGACAACTTTAGGGTTATGAGCCcgacgt                                                  >  1:215703/1‑149 (MQ=255)                                                                                                                       gAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAAcga                                                                            <  2:793230/106‑1 (MQ=255)                                                                                                                       gAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAAAcga                                                                            >  1:793230/1‑106 (MQ=255)                                                                                                                                      aGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTgggg                 >  1:1072529/1‑150 (MQ=255)                                                                                                                                       gggAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGc                <  1:822414/150‑1 (MQ=255)                                                                                                                                          aGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGc                <  1:1024058/147‑1 (MQ=255)                                                                                                                                          aGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGc                >  2:1024058/1‑147 (MQ=255)                                                                                                                                             ttcgtcagAACAAACCCCGC‑CTG‑TGTAAAAGCAGCGCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTc          <  1:778270‑M1/142‑1 (MQ=255)                                                                                                                                              ataAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCt         <  1:484605/150‑1 (MQ=255)                                                                                                                                               taAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCTGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAgg                                         >  1:956272/1‑117 (MQ=255)                                                                                                                                               taAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCTGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAgg                                         <  2:956272/117‑1 (MQ=255)                                                                                                                                               taAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAg                                          >  1:934111/1‑116 (MQ=255)                                                                                                                                               taAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAg                                          <  2:934111/116‑1 (MQ=255)                                                                                                                                               taAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTTGGGCGGATTCTa        <  2:506025/150‑1 (MQ=255)                                                                                                                                                  aGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAg     <  2:1072529/150‑1 (MQ=255)                                                                                                                                                     AACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTTTATCACGCGTCAGTGGGGCGGATTCTACAgtgt  >  1:303490‑M1/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                        AAACGTATCCAATGTTACTCCGGCCTCAGGCGTTTGCAGCGGCTTGGCAGGGTTAAAGATAGTTCATCCTGGGCACGACATCTCAAGCCTGCGGGTTGGCATGAGGGGAGGGAAAATCGAGGCGACGAAAGTCAGGGAGGTATAAAGCAACAAACCCCGCGCTGCTTTTACA‑CAG‑GCGGGGTTTGTTCTGACGAATATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGGCTGCTCCATCCCGCGTCAGTGGGGCGGATTCTACAGTGT  >  NC_002947/1380345‑1380642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.