New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2045058 = | 50 (1.020) | 6 (0.120) | 5/248 | NT | 10.1% | coding (229/1941 nt) | PP_1819 | methyl‑accepting chemotaxis transducer |
? | NC_002947 | 2045091 = | 57 (1.170) | coding (262/1941 nt) | PP_1819 | methyl‑accepting chemotaxis transducer |
CTGACGCTGGCGGTCGCGGCCATCGGCGTCGTGGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTGTCGAGGCCGTGCAAGCCAAGGAGCTGG > NC_002947/2044911‑2045205 | ctgACGCTGGCGGTCGCGGCCATCGGCGTCGTGGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATgcag < 1:1233924/150‑1 (MQ=255) gACGCTGGCGGTCGCGGCCATCGGCGTCGTGGCGTTGCAAAGCGATGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATgcagca < 2:927239/150‑1 (MQ=255) tCGCGGCCATCGGCGTCGTGGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCtt > 2:677950/1‑150 (MQ=255) cgGCCATCGGCGTCGTTGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGc < 1:1212790/150‑1 (MQ=255) cATCGGCGTCGTGGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTgg > 1:442999/1‑150 (MQ=255) aTCGGCGTCGTGGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCCCCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTgtc > 2:496673/1‑148 (MQ=255) gCGTCGTGGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGcc > 1:970941/1‑150 (MQ=255) gtGGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCa < 2:517986/149‑1 (MQ=255) gtGGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCa > 1:517986/1‑149 (MQ=255) gtGGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAg > 1:1058637/1‑150 (MQ=255) tGGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAgg < 2:524430/150‑1 (MQ=255) gTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATgcagca < 2:470493/117‑1 (MQ=255) gTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATgcagca > 1:470493/1‑117 (MQ=255) tGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTgg < 1:1051734/150‑1 (MQ=255) tGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTgg < 1:1051729/150‑1 (MQ=255) ttggcttgcacggcctcgacaaaggcttcgaatgcctggccataggcggcgagatcggtttgtgccgctgccagcgccggcaggcctcgggcgcgttcgaccaaaccCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTc < 1:1187650‑M1/42‑1 (MQ=255) ttggcttgcacggcctcgacaaaggcttcgaatgcctggccataggcggcgagatcggtttgtgccgctgccagcgccggcaggcctcgggcgcgttcgaccaaaccCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTc > 2:1187650‑M1/108‑149 (MQ=255) gTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAAcgc > 1:570778/1‑150 (MQ=255) ttGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAAcgcg > 2:884664/1‑150 (MQ=255) ggCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGcc < 1:258953/150‑1 (MQ=255) gCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGTGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCtt < 2:423692/114‑1 (MQ=255) gCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGTGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCtt > 1:423692/1‑114 (MQ=255) gCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTggcggc < 2:894562/125‑1 (MQ=255) gCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTggcggc > 1:894562/1‑125 (MQ=255) gCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGccc > 1:1221335/1‑150 (MQ=255) ccAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCg < 2:442999/150‑1 (MQ=255) cAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTgg < 2:1206044/136‑1 (MQ=255) cAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTgg > 1:1206044/1‑136 (MQ=255) gcgcTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAgg < 1:385854/150‑1 (MQ=255) gcgcTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAgg < 2:1221335/150‑1 (MQ=255) gcgcTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCACGAgg < 1:677950/150‑1 (MQ=255) ttCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTg > 2:780259/1‑150 (MQ=255) cTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCt > 2:917041/1‑150 (MQ=255) ttGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTg > 2:668524/1‑150 (MQ=255) gTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAg > 2:889139/1‑150 (MQ=255) cccAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGaa > 2:727189/1‑113 (MQ=255) cccAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGaa < 1:727189/113‑1 (MQ=255) aaTACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGAtctc < 2:597804/150‑1 (MQ=255) gtttgtgccgctgccagcgccggcaggcctcgggcgcgttcgaccaaaccCTGCAGGCCGACGCTTTGCGTGGCGGCCt < 2:1052962‑M1/29‑1 (MQ=255) gtttgtgccgctgccagcgccggcaggcctcgggcgcgttcgaccaaaccCTGCAGGCCGACGCTTTGCGTGGCGGCCt > 1:1052962‑M1/51‑79 (MQ=255) cTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGc > 2:191618/1‑150 (MQ=255) tGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGcc > 2:661226/1‑150 (MQ=255) gcgcGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCAtt < 2:1010403/150‑1 (MQ=255) gAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGaa < 2:970941/150‑1 (MQ=255) gAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGaa > 2:888401/1‑150 (MQ=255) tGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTAGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCtt > 1:966531/1‑150 (MQ=255) aGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTg < 1:661226/150‑1 (MQ=255) ggCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTGTCGa < 1:90664/150‑1 (MQ=255) gCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTGTCGAg < 1:835440/150‑1 (MQ=255) tttGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTGTCGAGGcc < 1:888401/150‑1 (MQ=255) ggcgcgttcgaccaaaccCAGCAGGCCGACGCTTTGCGTGGCGGCCt < 1:468305‑M1/29‑1 (MQ=255) ggcgcgttcgaccaaaccCAGCAGGCCGACGCTTTGCGTGGCGGCCt > 2:468305‑M1/19‑47 (MQ=255) cccTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTGTCGAGGCCGTGc > 2:505776/1‑150 (MQ=255) ccTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTGTCGAGGCCGTGCa > 2:818209/1‑150 (MQ=255) ccTGCGCTACGACATGCAGCAGGACGCAGCATTGCGTGGCGGCCTGCAGGGATTGGTCGAACGCGCCAGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCCCCTATGGCCAGGCATTCGAAGCCTTTGTCGAGGCCGTGCa > 2:584344/1‑150 (MQ=255) gcTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTGTCGAGGCCGTGCAAGCCa < 2:1058637/150‑1 (MQ=255) tCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTGTCGAGGCCGTGCAAGCCAAg > 2:1047701/1‑150 (MQ=255) tCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTGTCGAGGCCGTGCAAGCCAAg > 2:504222/1‑150 (MQ=255) cGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGAt > 2:641913/1‑94 (MQ=255) cGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGAt < 1:641913/94‑1 (MQ=255) tGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTGTCGAGGCCGTGCAAGCCAAGGAGCTgg < 1:884664/150‑1 (MQ=255) | CTGACGCTGGCGGTCGCGGCCATCGGCGTCGTGGCGTTGCAAAGCGTTGGCCAGCGCTTCGACAGCTTGCGTCAGCTGGCCCAGTTCAATACCGACTTACTGCGCTTGCGCGAGCATGAGCAGGCGTTTGCCCTGCGCTCCGACATGCAGCAGGCCGACGCTTTGCGTGGCGGCCTGCAGGGTTTGGTCGAACGCGCCCGAGGCCTGCCGGCGCTGGCAGCGGCACAAACCGATCTCGCCGCCTATGGCCAGGCATTCGAAGCCTTTGTCGAGGCCGTGCAAGCCAAGGAGCTGG > NC_002947/2044911‑2045205 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |