New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2263974	36 (0.730)	3 (0.060)	3/238	NT	7.5%	intergenic (+103/‑120)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta
	?	NC_002947	= 2264002	40 (0.860)					intergenic (+131/‑92)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta

GCGAAGATCGAGGCCTTCATGCGTGCGGTGAAACAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGA  >  NC_002947/2263830‑2264121                                                                                                                                                 |                                                                                                                                                    gcgAAGATCGAGGCCTTCATGCGTGCGGTGAAACAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGgc                                                                                                                                                <  1:305418/150‑1 (MQ=255)         cGAGGCCTTCATGCGTGCGGTGAAACAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGa                                                                                                                                        >  1:236475/1‑150 (MQ=255)             gCCTTCATGCGTGGGGTGAAACAGGCTTGATGGCAGATGGGACGGCGGGCTGCGCGCAAGCGTCCATAGCTTTCGCAGCACTGCGGGCCGCAAGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGcc                                                                                                                                    <  2:565559/150‑1 (MQ=255)                   aTGCGTGCGGTGAAACAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCcggcg                                                                                                                              >  1:1266731/1‑150 (MQ=255)                           ggTGAAACAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtcc                                                                                                                      <  2:1241797‑M2/150‑4 (MQ=255)                             tGAAACAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAccggccgccggggcttccagcgcgccactccac                                                                                                                    <  1:1039284‑M1/150‑34 (MQ=255)                               aaaCAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtccacc                                                                                                                   <  2:489041‑M2/149‑7 (MQ=255)                               aaaCAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtccacc                                                                                                                   >  1:489041‑M2/1‑143 (MQ=255)                                 aCAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAccggccgccggggcttccagcgcgccactccaccgc                                                                                                                 <  2:304625‑M1/149‑37 (MQ=255)                                 aCAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAccggccgccggggcttccagcgcgccactccaccgc                                                                                                                 >  1:304625‑M1/1‑113 (MQ=255)                                 aCAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATc                                                                                                                >  2:889656/1‑150 (MQ=255)                                    ggCTTGATGGCAGATGGGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCACTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGATGCCCCGGCGGCCGGTCCACCATCGtt                                                                                                             <  2:106775/150‑1 (MQ=255)                                         gATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATa                                                                                                        >  2:233091/1‑150 (MQ=255)                                                    tgACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGa                                                                                             <  1:843960/150‑1 (MQ=255)                                                               tgCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGAtttt                                                                                               >  2:742796/1‑137 (MQ=255)                                                               tgCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGAtttt                                                                                               <  1:742796/137‑1 (MQ=255)                                                               tgCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAagggca                                                                                  >  1:1213568/1‑150 (MQ=255)                                                                  gcgcCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGTCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAagggcaggg                                                                               <  2:877187/150‑1 (MQ=255)                                                                    gcCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTc                                                                                                           <  2:563386/120‑1 (MQ=255)                                                                    gcCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTc                                                                                                           >  1:563386/1‑120 (MQ=255)                                                                      cATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAagggcagggcagg                                                                           >  2:813292/1‑150 (MQ=255)                                                                        tCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAagggcagggcagggc                                                                         <  2:1266731/150‑1 (MQ=255)                                                                          gTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGATTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCg                                                                       >  1:413741/1‑150 (MQ=255)                                                                              aTAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGa                                                                   >  2:412759/1‑150 (MQ=255)                                                                              aTAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGa                                                                   <  1:1088960/150‑1 (MQ=255)                                                                                     tCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTc                                                            <  2:326329/150‑1 (MQ=255)                                                                                          gCCCTGCGGGCCGCATGCCAGCACCGGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGTTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGACATCCCCCg                                                       >  2:544306/1‑150 (MQ=255)                                                                                           cccTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGc                                                      >  1:312430/1‑150 (MQ=255)                                                                                              tGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTg                                                   >  1:652596/1‑150 (MQ=255)                                                                                               gCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGc                                                  <  2:1213568/150‑1 (MQ=255)                                                                                                            cAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAaggg                                                                                    >  1:728780/1‑103 (MQ=255)                                                                                                            cAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAaggg                                                                                    <  2:728780/103‑1 (MQ=255)                                                                                                              gCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCGATGGATTGTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGagaaag                                   >  1:79983/1‑150 (MQ=255)                                                                                                                 ccTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAgaaagaaa                                <  1:1241797/150‑1 (MQ=255)                                                                                                                 ccTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAgaaagaaa                                <  1:813292/150‑1 (MQ=255)                                                                                                                    gtgGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCa                             <  1:889656/150‑1 (MQ=255)                                                                                                                        cggcAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAg                         >  1:42472/1‑150 (MQ=255)                                                                                                                             aaaaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAgaaagaaa                                <  2:1242298/138‑1 (MQ=255)                                                                                                                             aaaaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAgaaagaaa                                >  1:1242298/1‑138 (MQ=255)                                                                                                                                aaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACTGCAGCCCCCGCCTGCCAATACTTGAGAAAGAAAGCATGAGCAACTGGt                 <  1:1187729/150‑1 (MQ=255)                                                                                                                                  acacATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTa               <  2:236475/150‑1 (MQ=255)                                                                                                                                   cacaTTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCGGGGCCGGTg                                                                    <  2:1281795/96‑1 (MQ=255)                                                                                                                                   cacaTTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCGGGGCCGGTg                                                                    >  1:1281795/1‑96 (MQ=255)                                                                                                                                          gCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtccaccgctaatgtgtttttttgccgccacaggtgctggcatgcggcccgcagggctgcgaaagctatggacgatggcgcgcagccagccgtcacatctgccatcaagcctgt        <  2:304625‑M2/149‑114 (MQ=255)                                                                                                                                          gCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtccaccgctaatgtgtttttttgccgccacaggtgctggcatgcggcccgcagggctgcgaaagctatggacgatggcgcgcagccagccgtcacatctgccatcaagcctgt        >  1:304625‑M2/1‑36 (MQ=255)                                                                                                                                            ggTGGAccggccgccggggcttccagcgcgccactccaccgctaatgtgtttttttgccgccacaggtgctggcatgcggcccgcagggctgcgaaagctatggacgatggcgcgcagccagccgtcacatctgccatcaagcctgttt      <  2:489041‑M1/149‑144 (MQ=255)                                                                                                                                            ggTGGAccggccgccggggcttccagcgcgccactccaccgctaatgtgtttttttgccgccacaggtgctggcatgcggcccgcagggctgcgaaagctatggacgatggcgcgcagccagccgtcacatctgccatcaagcctgttt      >  1:489041‑M1/1‑6 (MQ=255)                                                                                                                                             gTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtccaccgctaatgtgtttttttgccgccacaggtgctggcatgcggcccgcagggctgcgaaagctatggacgatggcgcgcagccagccgtcacatctgccatcaagcctgtttca    <  1:1039284‑M2/150‑118 (MQ=255)                                                                                                                                             gTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACt    >  2:805589/1‑150 (MQ=255)                                                                                                                                               ggAccggccgccggggcttccagcgcgccactccaccgctaatgtgtttttttgccgccacaggtgctggcatgcggcccgcagggctgcgaaagctatggacgatggcgcgcagccagccgtcacatctgccatcaagcctgtttcacc  <  2:1241797‑M1/150‑148 (MQ=255)                                                                                                                                                gAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACg                                                                 <  2:1070486/86‑1 (MQ=255)                                                                                                                                                gAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACg                                                                 >  1:1070486/1‑86 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GCGAAGATCGAGGCCTTCATGCGTGCGGTGAAACAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGA  >  NC_002947/2263830‑2264121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.