New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2263974	36 (0.730)	3 (0.060)	3/238	NT	7.5%	intergenic (+103/‑120)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta
	?	NC_002947	= 2264002	40 (0.860)					intergenic (+131/‑92)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta

GGTGAAACAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGT  >  NC_002947/2263856‑2264146                                                                                                                                                   |                                                                                                                                                 ggTGAAACAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtcc                                                                                                                                               <  2:1241797‑M2/150‑4 (MQ=255)     aaaCAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtccacc                                                                                                                                            <  2:489041‑M2/149‑7 (MQ=255)     aaaCAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtccacc                                                                                                                                            >  1:489041‑M2/1‑143 (MQ=255)       aCAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATc                                                                                                                                         >  2:889656/1‑150 (MQ=255)          ggCTTGATGGCAGATGGGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCACTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGATGCCCCGGCGGCCGGTCCACCATCGtt                                                                                                                                      <  2:106775/150‑1 (MQ=255)               gATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATa                                                                                                                                 >  2:233091/1‑150 (MQ=255)                          tgACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGa                                                                                                                      <  1:843960/150‑1 (MQ=255)                                     tgCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGAtttt                                                                                                                        >  2:742796/1‑137 (MQ=255)                                     tgCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGAtttt                                                                                                                        <  1:742796/137‑1 (MQ=255)                                     tgCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAagggca                                                                                                           >  1:1213568/1‑150 (MQ=255)                                        gcgcCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGTCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAagggcaggg                                                                                                        <  2:877187/150‑1 (MQ=255)                                          gcCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTc                                                                                                                                    <  2:563386/120‑1 (MQ=255)                                          gcCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTc                                                                                                                                    >  1:563386/1‑120 (MQ=255)                                            cATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAagggcagggcagg                                                                                                    >  2:813292/1‑150 (MQ=255)                                              tCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAagggcagggcagggc                                                                                                  <  2:1266731/150‑1 (MQ=255)                                                gTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGATTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCg                                                                                                >  1:413741/1‑150 (MQ=255)                                                    aTAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGa                                                                                            >  2:412759/1‑150 (MQ=255)                                                    aTAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGa                                                                                            <  1:1088960/150‑1 (MQ=255)                                                           tCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTc                                                                                     <  2:326329/150‑1 (MQ=255)                                                                gCCCTGCGGGCCGCATGCCAGCACCGGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGTTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGACATCCCCCg                                                                                >  2:544306/1‑150 (MQ=255)                                                                 cccTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGc                                                                               >  1:312430/1‑150 (MQ=255)                                                                    tGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTg                                                                            >  1:652596/1‑150 (MQ=255)                                                                     gCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGc                                                                           <  2:1213568/150‑1 (MQ=255)                                                                                  cAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAaggg                                                                                                             <  2:728780/103‑1 (MQ=255)                                                                                  cAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAaggg                                                                                                             >  1:728780/1‑103 (MQ=255)                                                                                    gCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCGATGGATTGTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGagaaag                                                            >  1:79983/1‑150 (MQ=255)                                                                                       ccTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAgaaagaaa                                                         <  1:813292/150‑1 (MQ=255)                                                                                       ccTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAgaaagaaa                                                         <  1:1241797/150‑1 (MQ=255)                                                                                          gtgGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCa                                                      <  1:889656/150‑1 (MQ=255)                                                                                              cggcAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAg                                                  >  1:42472/1‑150 (MQ=255)                                                                                                   aaaaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAgaaagaaa                                                         <  2:1242298/138‑1 (MQ=255)                                                                                                   aaaaaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAgaaagaaa                                                         >  1:1242298/1‑138 (MQ=255)                                                                                                      aaaCACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACTGCAGCCCCCGCCTGCCAATACTTGAGAAAGAAAGCATGAGCAACTGGt                                          <  1:1187729/150‑1 (MQ=255)                                                                                                        acacATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTa                                        <  2:236475/150‑1 (MQ=255)                                                                                                         cacaTTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCGGGGCCGGTg                                                                                             <  2:1281795/96‑1 (MQ=255)                                                                                                         cacaTTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCGGGGCCGGTg                                                                                             >  1:1281795/1‑96 (MQ=255)                                                                                                                gCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtccaccgctaatgtgtttttttgccgccacaggtgctggcatgcggcccgcagggctgcgaaagctatggacgatggcgcgcagccagccgtcacatctgccatcaagcctgt                                 >  1:304625‑M2/1‑36 (MQ=255)                                                                                                                gCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtccaccgctaatgtgtttttttgccgccacaggtgctggcatgcggcccgcagggctgcgaaagctatggacgatggcgcgcagccagccgtcacatctgccatcaagcctgt                                 <  2:304625‑M2/149‑114 (MQ=255)                                                                                                                   gTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGtccaccgctaatgtgtttttttgccgccacaggtgctggcatgcggcccgcagggctgcgaaagctatggacgatggcgcgcagccagccgtcacatctgccatcaagcctgtttca                             <  1:1039284‑M2/150‑118 (MQ=255)                                                                                                                   gTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACt                             >  2:805589/1‑150 (MQ=255)                                                                                                                      gAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACg                                                                                          >  1:1070486/1‑86 (MQ=255)                                                                                                                      gAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACg                                                                                          <  2:1070486/86‑1 (MQ=255)                                                                                                                          ggCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCt                      <  2:398917/150‑1 (MQ=255)                                                                                                                                   gAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTg                                            >  2:423242/1‑119 (MQ=255)                                                                                                                                   gAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTg                                            <  1:423242/119‑1 (MQ=255)                                                                                                                                         ccGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTcc       >  2:1060052/1‑150 (MQ=255)                                                                                                                                              ggcCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGt  <  1:233091/150‑1 (MQ=255)                                                                                                                                                   gTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAAc                              <  2:1253745/117‑1 (MQ=255)                                                                                                                                                   gTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAAc                              >  1:1253745/1‑117 (MQ=255)                                                                                                                                                   |                                                                                                                                                 GGTGAAACAGGCTTGATGGCAGATGTGACGGCTGGCTGCGCGCCATCGTCCATAGCTTTCGCAGCCCTGCGGGCCGCATGCCAGCACCTGTGGCGGCAAAAAAACACATTAGCGGTGGAGTGGCGCGCTGGAAGCCCCGGCGGCCGGTCCACCATCGTTTCATAAAAGATTTTGAGCTCAAGGGCAGGGCAGGGCCGGTGACGCCGTCCCCCGCCTGCCAATACTGGAGAAAGAAAGCATGAGCAACTGGTTAGTCGACAAACTGATCCCTTCGATCATGCGTTCCGAGGT  >  NC_002947/2263856‑2264146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.