New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3070249 =	43 (0.880)	4 (0.090)	3/236	NT	10.1%	coding (1295/1521 nt)	aldB‑II	aldehyde dehydrogenase
	?	NC_002947	3070310 =	31 (0.670)					coding (1356/1521 nt)	aldB‑II	aldehyde dehydrogenase

TTACTACATTCAGCCAACCCTGCTCAAGGGCAACAACAAGATGCGCGTGTTCCAGGAAGAAATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCA  >  NC_002947/3070100‑3070396                                                                                                                                                      |                                                                                                                                                    gattgatgtcgtagctcaccagcaggttcttggtctgctgataatggtcaagcatcatcttgtgggtctcacggccaacaccggacttcttgtaccccccgaacgccgcatgcgccgggtacaggtggtagcagttggtccacactcgcc                                                                                                                                                     <  1:242189‑M1/1‑1 (MQ=255)       tgtcgtagctcaccagcaggaccttggtctgctgataatggtcaagcatcatcttgtgggtctcacggccaacaccggacttcttgtaccccccgaacgccgcatgcgccgggtacaggcggtcgcagttggtccccactcgcCCGGCCt                                                                                                                                               <  2:148782‑M1/7‑1 (MQ=255)        aTTCAGCCAACCCTGCTCAAGGGCAACAACAAGATGCGCGTGTTCCAGGAAGAAATCTTCGGCCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCtg                                                                                                                                              >  2:69657/1‑150 (MQ=255)              ccAACCCTGCTCAAGGGCAACAACAAGATGCGCGTGTTCCAGGAAGAAATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGAcc                                                                                                                                        >  1:331682/1‑150 (MQ=255)                aaCCCTGCTCAAGGGCAACAACAAGATGCGCGTGTTCCACGAAGAAATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGACGCCGGCCTGTGGACCcg                                                                                                                                      >  2:1026388/1‑150 (MQ=255)                           aGGGCAACAACAAGATGCGCGTGTTCCAGGAAGAAATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAAcc                                                                                                                           <  1:699672/150‑1 (MQ=255)                            gggCAACAACAAGATGCGCGTGTTCCAGGAAGAAATCTTCGGCCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACcg                                                                                                                          <  1:69657/150‑1 (MQ=255)                             ggCAACAACAAGATGCGCGTGTTCCAGGAAGAAATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACcgc                                                                                                                         >  2:383458/1‑150 (MQ=255)                                   aacaaGATGCGCGTGTTCCAGGAAGAAATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTAc                                                                                                                   >  1:930546/1‑150 (MQ=255)                                     caaGATGCGCGTGTTCCAGGAAGAAATCTTTGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCg                                                                                                                 >  2:321267/1‑150 (MQ=255)                                                       ggAAGAAATCGTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGCTCaa                                                                                               >  2:242189/1‑150 (MQ=255)                                                        gaagaaATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTa                                                                                                                    <  2:115312/128‑1 (MQ=255)                                                        gaagaaATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTa                                                                                                                    >  1:115312/1‑128 (MQ=255)                                                          agaaATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGAAACGGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGc                                                                                            >  1:85584/1‑150 (MQ=255)                                                           gaaATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCAGGGGCCGCGGGATCAAGGcc                                                                                           <  2:444715/150‑1 (MQ=255)                                                            aaaTCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCTGCCTGGGCGCCGGCCtgtg                                                                                                                                            <  1:39749/100‑1 (MQ=255)                                                            aaaTCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGACCTGGGCGCCGGCCtgtg                                                                                                                                            >  2:39749/1‑100 (MQ=255)                                                                  tCGGGCGAGTGGGGGGCGTCACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAg                                                                                    <  2:331682/150‑1 (MQ=255)                                                                  gtctcacggccaacaccggacttcttgtaccccccgaacgccgcatgcgccgggtacaggtggtagcagttggtccacactcgcCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCgg                                                                                         >  1:17676‑M1/85‑145 (MQ=255)                                                                  ggctcacggccaacaccggacttcttgtaccccccgaacgccgcatgcgccgggtacaggtggtagcagttggtccacactcgcCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCgg                                                                                         <  2:17676‑M1/61‑1 (MQ=255)                                                                      gCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCgg                                                                                                     <  1:947989/129‑1 (MQ=255)                                                                      gCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCgg                                                                                                     >  2:947989/1‑129 (MQ=255)                                                                        cggtggtgGGCGGGACCACCGTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGa                                                                              <  2:165323/148‑1 (MQ=255)                                                                         aGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGAc                                                                             >  2:1032321/1‑150 (MQ=255)                                                                         aGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGAc                                                                             <  1:383458/150‑1 (MQ=255)                                                                         aGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGAc                                                                             >  1:1261865/1‑150 (MQ=255)                                                                           tggtggGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCa                                                                           >  2:732915/1‑150 (MQ=255)                                                                              tggGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACt                                                                        <  2:1115562/150‑1 (MQ=255)                                                                                ggCGTGACCACCTTCAAGGACGAAGCCGTAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCAGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGc                                                                      <  1:193787/150‑1 (MQ=255)                                                                                ggCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGc                                                                      <  2:474169/150‑1 (MQ=255)                                                                                          ccTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCt                                                                     <  2:63940/141‑1 (MQ=255)                                                                                          ccTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCt                                                                     >  1:63940/1‑141 (MQ=255)                                                                                                cccccgaacgccgcatgcgccgggtacaggtggtagcagttggtccacactcgcCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCggg                                                                                        >  1:367445‑M1/55‑116 (MQ=255)                                                                                                cccccgaacgccgcatgcgccgggtacaggtggtagcagttggtccacactcgcCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCggg                                                                                        <  2:367445‑M1/62‑1 (MQ=255)                                                                                                aGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCgcgc                                                                                                                       >  1:639645/1‑85 (MQ=255)                                                                                                aGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCgcgc                                                                                                                       <  2:639645/85‑1 (MQ=255)                                                                                                     gaagccgaagcGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGa                                                                                     <  2:1099870/114‑1 (MQ=255)                                                                                                     gaagccgaagcGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGa                                                                                     >  1:1099870/1‑114 (MQ=255)                                                                                                        gccgaagcGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATgcg                                              <  1:1237564/150‑1 (MQ=255)                                                                                                           gaagcGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATgcggcg                                           >  2:424474/1‑150 (MQ=255)                                                                                                           gaagcGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATgcggcg                                           >  2:561272/1‑150 (MQ=255)                                                                                                              gcgcTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTc                                        <  2:85584/150‑1 (MQ=255)                                                                                                                  tGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCgggg                                    >  2:116826/1‑150 (MQ=255)                                                                                                                     cGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGACGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGt                                 >  2:815221/1‑150 (MQ=255)                                                                                                                                gACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGc                                                                      >  1:102246/1‑102 (MQ=255)                                                                                                                                gACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGc                                                                      <  2:102246/102‑1 (MQ=255)                                                                                                                                gACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTcc                      >  2:175977/1‑150 (MQ=255)                                                                                                                                     tGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCgggg                                    >  2:267748/1‑131 (MQ=255)                                                                                                                                     tGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCgggg                                    <  1:267748/131‑1 (MQ=255)                                                                                                                                                 gggCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGAc     >  1:780668/1‑150 (MQ=255)                                                                                                                                                  ggCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGAcc    <  1:815221/150‑1 (MQ=255)                                                                                                                                                    cgcCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCca  <  1:561272/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    TTACTACATTCAGCCAACCCTGCTCAAGGGCAACAACAAGATGCGCGTGTTCCAGGAAGAAATCTTCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCA  >  NC_002947/3070100‑3070396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.