New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3070249 =	43 (0.880)	4 (0.090)	3/236	NT	10.1%	coding (1295/1521 nt)	aldB‑II	aldehyde dehydrogenase
	?	NC_002947	3070310 =	31 (0.670)					coding (1356/1521 nt)	aldB‑II	aldehyde dehydrogenase

TCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATC  >  NC_002947/3070165‑3070458                                                                                                                                                  |                                                                                                                                                     tCGGGCGAGTGGGGGGCGTCACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAg                                                                                                                                                  <  2:331682/150‑1 (MQ=255)       cggtggtgGGCGGGACCACCGTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGa                                                                                                                                            <  2:165323/148‑1 (MQ=255)        aGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGAc                                                                                                                                           <  1:383458/150‑1 (MQ=255)        aGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGAc                                                                                                                                           >  1:1261865/1‑150 (MQ=255)        aGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGAc                                                                                                                                           >  2:1032321/1‑150 (MQ=255)          tggtggGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCa                                                                                                                                         >  2:732915/1‑150 (MQ=255)             tggGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACt                                                                                                                                      <  2:1115562/150‑1 (MQ=255)               ggCGTGACCACCTTCAAGGACGAAGCCGTAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCAGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGc                                                                                                                                    <  1:193787/150‑1 (MQ=255)               ggCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGc                                                                                                                                    <  2:474169/150‑1 (MQ=255)                         ccTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCt                                                                                                                                   >  1:63940/1‑141 (MQ=255)                         ccTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCt                                                                                                                                   <  2:63940/141‑1 (MQ=255)                               cccccgaacgccgcatgcgccgggtacaggtggtagcagttggtccacactcgcCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCggg                                                                                                                                                      <  2:367445‑M1/62‑1 (MQ=255)                               cccccgaacgccgcatgcgccgggtacaggtggtagcagttggtccacactcgcCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCggg                                                                                                                                                      >  1:367445‑M1/55‑116 (MQ=255)                                    gaagccgaagcGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGa                                                                                                                                                   <  2:1099870/114‑1 (MQ=255)                                    gaagccgaagcGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGa                                                                                                                                                   >  1:1099870/1‑114 (MQ=255)                                       gccgaagcGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATgcg                                                                                                            <  1:1237564/150‑1 (MQ=255)                                          gaagcGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATgcggcg                                                                                                         >  2:424474/1‑150 (MQ=255)                                          gaagcGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATgcggcg                                                                                                         >  2:561272/1‑150 (MQ=255)                                             gcgcTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTc                                                                                                      <  2:85584/150‑1 (MQ=255)                                                 tGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCgggg                                                                                                  >  2:116826/1‑150 (MQ=255)                                                    cGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGACGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGt                                                                                               >  2:815221/1‑150 (MQ=255)                                                               gACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGc                                                                                                                                    >  1:102246/1‑102 (MQ=255)                                                               gACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGc                                                                                                                                    <  2:102246/102‑1 (MQ=255)                                                               gACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTcc                                                                                    >  2:175977/1‑150 (MQ=255)                                                                    tGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCgggg                                                                                                  <  1:267748/131‑1 (MQ=255)                                                                    tGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCgggg                                                                                                  >  2:267748/1‑131 (MQ=255)                                                                                gggCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGAc                                                                   >  1:780668/1‑150 (MQ=255)                                                                                 ggCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGAcc                                                                  <  1:815221/150‑1 (MQ=255)                                                                                   cgcCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCca                                                                <  1:561272/150‑1 (MQ=255)                                                                                    cccggccttgatcccgcggcccatgcggtaagcgcggttgatgtcgcgggtccacaggccggGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCggggg                                                                                                 <  2:367445‑M2/54‑1 (MQ=255)                                                                                    cccggccttgatcccgcggcccatgcggtaagcgcggttgatgtcgcgggtccacaggccggGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCggggg                                                                                                 >  1:367445‑M2/63‑116 (MQ=255)                                                                                     ccggccttgatcccgcggcccatgcggtaagcgcggttgatgtcgcgggtccacaggccggGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCgtgagcc                                                                   <  2:17676‑M2/84‑3 (MQ=255)                                                                                     ccggccttgatcccgcggcccatgcggtaagcgcggttgatgtcgcgggtccacaggccggGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGAc                                                                   >  1:17676‑M2/62‑145 (MQ=255)                                                                                         CCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAgat                                                          >  1:1032321‑M1/1‑150 (MQ=255)                                                                                          CTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGtt                                                                              <  1:455617‑M1/129‑1 (MQ=255)                                                                                          CTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGtt                                                                              >  2:455617‑M1/1‑129 (MQ=255)                                                                                          CTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTAACACCTATACCCGGCGCATGCGGCGTTCGGGGGGCACACGAAGCCCGGACTTGGCCGTGAGACCCACAAgatg                                                         <  1:222719‑M1/150‑1 (MQ=255)                                                                                                      gACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCAt                                             >  1:148782/1‑150 (MQ=255)                                                                                                       aCATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCAtt                                            <  1:1026388/150‑1 (MQ=255)                                                                                                       aCATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCAtt                                            <  2:1261865/150‑1 (MQ=255)                                                                                                       aCATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCAtt                                            <  1:321267/150‑1 (MQ=255)                                                                                                                 cgcTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGAc                                                                   >  2:1246985/1‑117 (MQ=255)                                                                                                                 cgcTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGAc                                                                   <  1:1246985/117‑1 (MQ=255)                                                                                                                              ggCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGGCCAAGAACctgctg                     <  2:930546/150‑1 (MQ=255)                                                                                                                                           aggccggGCGAGTGGGGACCAACTGCGACCGCCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGGTCCTGCTGGTGAGCTACGACa        <  2:148782‑M2/143‑1 (MQ=255)                                                                                                                                                 gGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATc  <  1:242189‑M2/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     TCGGGCCAGTGGTGGGCGTGACCACCTTCAAGGACGAAGCCGAAGCGCTGGCGATCGCCAACGACAGTGAATTCGGCCTGGGCGCCGGCCTGTGGACCCGCGACATCAACCGCGCTTACCGCATGGGCCGCGGGATCAAGGCCGGGCGAGTGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCGGCGTTCGGGGGGTACAAGAAGTCCGGTGTTGGCCGTGAGACCCACAAGATGATGCTTGACCATTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATC  >  NC_002947/3070165‑3070458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.