New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3388268	32 (0.650)	4 (0.090)	4/238	NT	11.5%	coding (74/480 nt)	PP_2990	MerR family transcriptional regulator
	?	NC_002947	= 3388288	31 (0.660)					coding (94/480 nt)	PP_2990	MerR family transcriptional regulator

ACACGTTGTGCTTGGCCGCCCGATGACTTCAGGTTTAAAGTCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAGCGCACAGGCGGCAGGTTTTTCTTTGGAGGAGATCCGGCAATTGATGCCGATGGACGCCAGTG  >  NC_002947/3388119‑3388411                                                                                                                                                      |                                                                                                                                                acacGTTGTGCTTGGCCGCCCGATGACTTCAGGTTTAAAGTCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCACTGGCCT                                                                                                                                                 >  2:935016‑M1/1‑150 (MQ=255)      ttGTGCTTGGCCGCCCGATGACTTCAGGTTTAAAGTCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCACTGGCCTcatag                                                                                                                                            <  1:935016‑M1/150‑6 (MQ=255)                  gccCGATGACTTCAGGTTTAAAGTCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAgc                                                                                                                                <  1:1051353/150‑1 (MQ=255)                            ttCAGGTTTAAAGTCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCaa                                                                                                                      >  2:808397/1‑150 (MQ=255)                              cAGGTTTAAAGTCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCAAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATg                                                                                                                    <  2:1188109/150‑1 (MQ=255)                                   ttAAAGTCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATTGATAc                                                                                                               >  1:1213817/1‑150 (MQ=255)                                   ttAAAGTCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATAc                                                                                                               <  1:808397/150‑1 (MQ=255)                                      aaGTCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCTGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGAAACCga                                                                                                            <  2:960267/150‑2 (MQ=255)                                      aaGTCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCgg                                                                                                            <  1:822849/150‑1 (MQ=255)                                         tCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGAc                                                                                                         >  1:568695/1‑150 (MQ=255)                                              tttAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATAACAAAACTATgc                                                                                                    >  2:91795/1‑150 (MQ=255)                                                        aTAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATa                                                                                                                <  2:808241/128‑1 (MQ=255)                                                        aTAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATa                                                                                                                >  1:808241/1‑128 (MQ=255)                                                         tAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCg                                                                                         >  1:74087/1‑150 (MQ=255)                                                                        gAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAAc                                                                          <  1:1258355/150‑1 (MQ=255)                                                                          ggTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCATGTAGAACTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACtt                                                                        >  1:1185789/1‑150 (MQ=255)                                                                           gTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTtgcgctcgacggagctgatcaggccactggcctcatagaatcgaatgc                                                                                                 >  1:185986‑M1/1‑76 (MQ=255)                                                                           gTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTtgcgctcgacggagctgatcaggccactggcctcatagaatcgaatgc                                                                                                 <  2:185986‑M1/124‑49 (MQ=255)                                                                             aTGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCCTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTtatg                                                                     <  2:878422/150‑2 (MQ=255)                                                                                    tAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAgcg                                                              <  2:74087/150‑1 (MQ=255)                                                                                       gTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAGCGcac                                                           >  1:636163/1‑150 (MQ=255)                                                                                            cTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTACAACTTATAACCAGCGCACAggcg                                                      <  2:893708/150‑1 (MQ=255)                                                                                                cAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAGCGCACAGGCGGCAg                                                  <  1:877893/150‑1 (MQ=255)                                                                                                 aaaaaTCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTtgcgctcgacggagctgatcaggccactggcctcatagaatcgaat                                                                                                   <  1:1162527‑M1/100‑47 (MQ=255)                                                                                                 aaaaaTCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTtgcgctcgacggagctgatcaggccactggcctcatagaatcgaat                                                                                                   >  2:1162527‑M1/1‑54 (MQ=255)                                                                                                        aGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAGCGCACAGGCGGCAGGTTTTTCt                                          <  1:35164/150‑1 (MQ=255)                                                                                                               tGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGtg                                                                                 <  2:917708/104‑1 (MQ=255)                                                                                                               tGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGtg                                                                                 >  1:917708/1‑104 (MQ=255)                                                                                                                          cGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAGCGCACAGGCGGCAGGTTTTTCTTTGGAGGAGATCCGGCaa                        >  2:956048/1‑150 (MQ=255)                                                                                                                           gCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAaggccactggcctcatagaatcgaatgcgtgacggtgccagtccactgatttttgccagttcacctattctcatac                                                 <  2:185986‑M2/124‑77 (MQ=255)                                                                                                                           gCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAaggccactggcctcatagaatcgaatgcgtgacggtgccagtccactgatttttgccagttcacctattctcatac                                                 >  1:185986‑M2/1‑48 (MQ=255)                                                                                                                            cATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGtgct                                                                               <  2:328835/93‑1 (MQ=255)                                                                                                                            cATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGtgct                                                                               >  1:328835/1‑93 (MQ=255)                                                                                                                             aTTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAaggccactggcctcatagaatcgaatgcgtgacggtgccagtccactgattttt                                                                       <  1:1162527‑M2/100‑55 (MQ=255)                                                                                                                             aTTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAaggccactggcctcatagaatcgaatgcgtgacggtgccagtccactgattttt                                                                       >  2:1162527‑M2/1‑46 (MQ=255)                                                                                                                             aTTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATgcgc                                                                                                  <  2:1001837/73‑1 (MQ=255)                                                                                                                             aTTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATgcgc                                                                                                  >  1:1001837/1‑73 (MQ=255)                                                                                                                                 gATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAGCGCACAGGCGGCAGGTTTTTCTTTGGAGGAGATCCGGCAATTGATGc                 >  2:283051/1‑150 (MQ=255)                                                                                                                                             ccAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATTGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAGCGCACAGGCGGCAGGTTTTTCTTTGGAGGAGATCCGGCAATTGATGCCGATGGACGCCa     <  2:1213817/150‑1 (MQ=255)                                                                                                                                             ccAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAGCGCACAGGCGGCAGGTTTTTCTTTgga                                     >  2:917756/1‑118 (MQ=255)                                                                                                                                             ccAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAGCGCACAGGCGGCAGGTTTTTCTTTgga                                     <  1:917756/118‑1 (MQ=255)                                                                                                                                                gTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAGCGCACAGGCTGCAGGTTTTTCTTTGGAGGAGATCCGGCAATTGATGCCGATGGACGCCAGtg  <  1:91795/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                ACACGTTGTGCTTGGCCGCCCGATGACTTCAGGTTTAAAGTCAACTTTAAGGTCAATAGGTTTTTCAGGGTGAGGTATGAGAATAGGTGAACTGGCAAAAATCAGTGGACTGGCACCGTCACGCATTCGATTCTATGAGGCCAGTGGCCTGATCAGCTCCGTCGAGCGCAAGGCCAATGGATACCGGGACTATGCGCCTGATACCGAATGGGTGCTGCAACTTATAACCAGCGCACAGGCGGCAGGTTTTTCTTTGGAGGAGATCCGGCAATTGATGCCGATGGACGCCAGTG  >  NC_002947/3388119‑3388411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.