New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4204746 =	44 (0.900)	3 (0.060)	3/236	NT	6.8%	coding (3074/6624 nt)	PP_3691	DNA helicase‑related protein
	?	NC_002947	4204786 =	41 (0.890)					coding (3034/6624 nt)	PP_3691	DNA helicase‑related protein

TTTGGCCAGAACGCTTCTTCAGCTTCCTTCCACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTGAGCGCTCGGTGTTGTTCAA  >  NC_002947/4204599‑4204893                                                                                                                                                    |                                                                                                                                                     gttccatttcccaacggctgagcgatggctgtgcatgggttgaacaacaccgagcgctcaacgttaagctttcgccgctctggtcttctcgcgtcatggccgatgcgaagcagggtatcgagttgctacagcaacgtcgtaccacctTCg                                                                                                                                                    >  2:580230‑M1/148‑150 (MQ=255)  ttGGCCAGAACGCTTCTTCAGCTTCCTTCCACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCgg                                                                                                                                                   <  2:258043/150‑1 (MQ=255)      atttcccaacggctgagcgatggctgtgcatgggttgaacaacaccgagcgctcaacgttaagctttcgccgctctggtcttctcgcgtcatggccgatgcgaagcagggtatcgagttgctacagcaacgtcgtaccacctTCGGTGa                                                                                                                                                >  2:1193557‑M1/143‑149 (MQ=255)      atttcccaacggctgagcgatggctgtgcatgggttgaacaacaccgagcgctcaacgttaagctttcgccgctctggtcttctcgcgtcatggccgatgcgaagcagggtatcgagttgctacagcaacgtcgtaccacctTCGGTGa                                                                                                                                                <  1:1193557‑M1/7‑1 (MQ=255)             gCTTCTTCAGCTTCCTTCCACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTcc                                                                                                                                       >  1:525313/1‑150 (MQ=255)              cttcttCAGCTTCCTTCCACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTAAGCAAGGACATCGGTGA‑CACTCTccc                                                                                                                                      >  2:1011517/1‑149 (MQ=255)                   tcAGCTTCCTTCCACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAg                                                                                                                                 <  1:895500/150‑1 (MQ=255)                   tcAGCTTCCTTCCACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAg                                                                                                                                 >  2:895500/1‑150 (MQ=255)                      gCTTCCTTCCACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGcc                                                                                                                              <  1:718089/150‑1 (MQ=255)                          ccttccACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGACGAGTGCGAGTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGAAATCGGTGA‑CACTCTCCGGCCAGGCCGGGc                                                                                                                          >  1:1043207/1‑150 (MQ=255)                            ttccACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCTCACTGAGCTGCTTGTTGAGCTCCAATATTTGGCCAAGCTGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTg                                                                                                                        >  1:414898/1‑150 (MQ=255)                            ttccACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTg                                                                                                                        >  2:179958/1‑150 (MQ=255)                             tccACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGa                                                                                                                       <  2:1047838/150‑1 (MQ=255)                                       cagcaACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGaa                                                                                                             >  1:945705/1‑150 (MQ=255)                                           aaCAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAggtg                                                                                                         <  1:521155/150‑1 (MQ=255)                                             cAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAggtggt                                                                                                       <  2:1165393/150‑1 (MQ=255)                                                      gTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTg                                                                                              <  1:1080447/150‑1 (MQ=255)                                                       tCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGc                                                                                             >  2:286907/1‑150 (MQ=255)                                                        gctcaacgttaagctttcgccgctctggtcttctcgcgtcatggccgatgcgaagcagggtatcgagttgctacagcaacgtcgtaccacctTCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTa                                                                                                      <  2:121785‑M1/48‑1 (MQ=255)                                                        gctcaacgttaagctttcgccgctctggtcttctcgcgtcatggccgatgcgaagcagggtatcgagttgctacagcaacgtcgtaccacctTCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTa                                                                                                      >  1:121785‑M1/93‑140 (MQ=255)                                                                         tCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATAccc                                                                           <  1:362134/150‑1 (MQ=255)                                                                              aTAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCtt                                                                      <  2:819262/150‑1 (MQ=255)                                                                                  gTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCTCCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCa                                                                  >  2:1272879/1‑150 (MQ=255)                                                                                       aCTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGc                                                             >  2:399094/1‑150 (MQ=255)                                                                                       aCTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGc                                                             >  2:371201/1‑150 (MQ=255)                                                                                       aCTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGc                                                             >  1:584501/1‑150 (MQ=255)                                                                                               gctgctTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGAcgc                                                     >  2:1060197/1‑150 (MQ=255)                                                                                                  gctTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCGTGACGCgag                                                  >  2:1019835/1‑150 (MQ=255)                                                                                                     tGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGagaag                                               <  2:414898/150‑1 (MQ=255)                                                                                                          tctACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGATATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCag                                          >  1:1143302/1‑150 (MQ=255)                                                                                                          tctACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCag                                          >  2:1027771/1‑150 (MQ=255)                                                                                                           ctactaTTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCGGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCaga                                         >  2:124459/1‑150 (MQ=255)                                                                                                                     gCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGGGAGAAGACCAGAGCGGCGAAAg                               >  1:250445/1‑150 (MQ=255)                                                                                                                     gCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGGGAGAAGACCAGAGCGGCGAAAg                               >  1:250433/1‑150 (MQ=255)                                                                                                                     gCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAg                               <  1:399094/150‑1 (MQ=255)                                                                                                                      ccAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGc                              >  1:883642/1‑150 (MQ=255)                                                                                                                        aaGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCtt                            >  1:1027666/1‑150 (MQ=255)                                                                                                                          gCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTaa                          >  2:329346/1‑150 (MQ=255)                                                                                                                            aGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACg                        >  2:1165214/1‑150 (MQ=255)                                                                                                                              tGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGtt                      >  2:777013/1‑150 (MQ=255)                                                                                                                               tacagcaacgtcgtaccacctTCGGTGAGCTCAGCCCGGCCTGGCCGGAGAGTG‑TCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTg                     <  2:658986‑M1/129‑1 (MQ=255)                                                                                                                                ccACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTGa                    <  2:945705/150‑1 (MQ=255)                                                                                                                                  aCCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATAcc                                                                            >  2:499990/1‑92 (MQ=255)                                                                                                                                  aCCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATAcc                                                                            <  1:499990/92‑1 (MQ=255)                                                                                                                                  aCCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGagaag                                               <  2:983392/121‑1 (MQ=255)                                                                                                                                  aCCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGagaag                                               >  1:983392/1‑121 (MQ=255)                                                                                                                                  aCCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTGAgc                  >  1:1253969/1‑150 (MQ=255)                                                                                                                                       cTGCGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTGAGCGCTCg             <  1:1011517/150‑1 (MQ=255)                                                                                                                                          aGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCGTGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTGAGCGCTCGgtg          <  1:1019835/150‑1 (MQ=255)                                                                                                                                              aGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTGAGCGCTCGGtgttgt      <  1:777013/150‑1 (MQ=255)                                                                                                                                              aGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTGAGCGCTCGGtgttgt      <  1:1060197/150‑1 (MQ=255)                                                                                                                                                  cATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAATGTGTTACTACGTTGCTGTAGCAACTCGCTCCCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTGAGCGCTCGGTGTTGTTCaa  <  1:286907/150‑1 (MQ=255)                                                                                                                                                    TCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTGAGCGCTCGGtgtt        >  2:177734‑M1/1‑142 (MQ=255)                                                                                                                                                    TCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTGAGCGCTCGGtgtt        <  1:177734‑M1/142‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TTTGGCCAGAACGCTTCTTCAGCTTCCTTCCACTCGCGCAGCAACAGATCGATGTCGAGCGACTCAATCGTATCGCCATAGGTCGCACTGAGCTGCTGCTTGAGCTCTACTATTTGGCCAAGCAGTGCCACCGCCTGAGCAAGGACATCGGTGA‑CACTCTCCGGCCAGGCCGGGCTGAGCTCACCGAAGGTGGTACGACGTTGCTGTAGCAACTCGATACCCTGCTTCGCATCGGCCATGACGCGAGAAGACCAGAGCGGCGAAAGCTTAACGTTGAGCGCTCGGTGTTGTTCAA  >  NC_002947/4204599‑4204893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.