| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 6,098,935 | Δ6 bp | 66.7% | coding (205‑210/867 nt) | PP_5350 ← | RpiR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6098941 = | 14 (0.290) | 24 (0.530) | 21/232 | NT | 66.7% | coding (204/867 nt) | PP_5350 | RpiR family transcriptional regulator |
| ? | NC_002947 | = 6098934 | 11 (0.240) | coding (211/867 nt) | PP_5350 | RpiR family transcriptional regulator | |||||
GCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCCACTTTC > NC_002947/6098795‑6099088 | tgcagcgcctgcggatcaaggtgctcgcgcacttccatcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGc > 1:967970‑M1/147‑150 (MQ=255) tGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCagcttcagcttc > 1:954313/1‑150 (MQ=255) agcgcctgcggatcaaggtgctcgcgcacttccatcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTc > 1:885756‑M1/144‑150 (MQ=255) gCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAgcttcagcttca < 2:717198/150‑1 (MQ=255) gcctgcggatcaaggtgctcgcgcacttccatcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAgg > 1:1211446‑M1/141‑150 (MQ=255) tgcggatcaaggtgctcgcgcacttccatcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTcc > 2:243326‑M1/138‑150 (MQ=255) gcggatcaagttgctcgcgcacttccagcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCt > 1:259523‑M1/137‑150 (MQ=255) ggTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTAAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCAAGACTTTGCGCCAGCTTCAGCTTCAGGTCCTGGa > 2:266154/1‑150 (MQ=255) tcaaggtgctcgcgcacttccatcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggctaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAg > 1:984059‑M1/132‑150 (MQ=255) ctcgcgcacttccatcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGagca > 2:1202076‑M1/124‑150 (MQ=255) cgcgcacttccatcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGagcagc > 1:232325‑M1/122‑150 (MQ=255) ttCCATCAGGGTGTGCAGGGTGGTGTCGAAGAACTTGAGGGAGTGGGCAGCAACCGTATGGTGTTCGTGGGTGAGGAAATGCCCCTAGCTGGCCCTGGCAGCCAGGCTTTGCGC‑‑‑‑‑‑CAGCTTCAGGTCCTGGAAGCCCGAGCGGCCGATGGc > 1:292115/1‑150 (MQ=255) gcacttccatcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCaa > 2:238731‑M1/119‑150 (MQ=255) ccATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCaa < 2:1097895/150‑1 (MQ=255) tCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCTAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATgg < 1:541276/150‑1 (MQ=255) gggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCGCGGCAGa < 2:1048763‑M1/44‑1 (MQ=255) gggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGa < 2:201027‑M1/44‑1 (MQ=255) gtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGag < 2:666551‑M1/25‑1 (MQ=255) gtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGag > 1:666551‑M1/105‑129 (MQ=255) gcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCGCGGCAGAAACGCa > 1:1048763‑M1/101‑150 (MQ=255) gAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGt > 1:14520/1‑150 (MQ=255) gaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTc < 1:1158296‑M1/63‑1 (MQ=255) tagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGa < 2:13439‑M1/17‑1 (MQ=255) tagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGa > 1:13439‑M1/72‑88 (MQ=255) aCCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGCGCGGGCGATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTgc < 2:954313/150‑1 (MQ=255) aCCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCGTCAGGTCCTGGAAGCCTGAGCTGCGAATGGCCAGGCAGAAACGCACGCTGGTCGCCTCACCGATAGCGCCGCtgtga > 1:1110495/1‑149 (MQ=255) cgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATc < 2:596645‑M1/90‑1 (MQ=255) cgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCa > 1:596645‑M1/56‑150 (MQ=255) ttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc > 2:883576‑M1/52‑144 (MQ=255) ttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc < 1:883576‑M1/93‑1 (MQ=255) ttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGa < 1:1104637‑M1/99‑1 (MQ=255) gtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCt > 2:1158296‑M1/49‑150 (MQ=255) gcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCAGGGAAAGAGTGTCGCTTATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATg < 2:675377‑M1/109‑1 (MQ=255) actgaccgaagctggccccggaacccgctctttgtccCAGTTTCAGGTCCGGGAGGCCTGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACgg > 2:1104637‑M1/38‑150 (MQ=255) ggCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCgg < 2:14520/150‑1 (MQ=255) aagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCggg < 1:691985‑M1/121‑1 (MQ=255) cccGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCgg < 1:134438/147‑1 (MQ=255) cccGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCgg > 2:134438/1‑147 (MQ=255) gccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCa > 2:515023‑M1/24‑118 (MQ=255) gccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCa < 1:515023‑M1/95‑1 (MQ=255) gCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGTCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTCCATGACGGCAGCCGGGTCGagc > 2:396060/1‑150 (MQ=255) gctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGc > 1:467661‑M1/10‑150 (MQ=255) cagcttcagcttCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCCAc < 1:266154/150‑1 (MQ=255) cgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGACCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAACTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCCACttt < 1:1041628‑M1/147‑1 (MQ=255) gcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCCACTTTc > 1:201027‑M1/3‑150 (MQ=255) gcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAACCGGGTCGAGCAGCACGTGGTCGGCCACTTTc < 2:102945‑M1/148‑1 (MQ=255) | GCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCCACTTTC > NC_002947/6098795‑6099088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |