| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 6,098,935 | Δ6 bp | 66.7% | coding (205‑210/867 nt) | PP_5350 ← | RpiR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6098941 = | 14 (0.290) | 24 (0.530) | 21/232 | NT | 66.7% | coding (204/867 nt) | PP_5350 | RpiR family transcriptional regulator |
| ? | NC_002947 | = 6098934 | 11 (0.240) | coding (211/867 nt) | PP_5350 | RpiR family transcriptional regulator | |||||
TTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCC > NC_002947/6098785‑6099082 | ttgttgCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTgcgc > 1:1202076/1‑150 (MQ=255) tgCAGCGCCTGCGGATCCAGGTGCTCGTGCTGCTGGTAGGGCGTGTGGAGGGTGGGGGCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagc < 2:977589/150‑1 (MQ=255) tgCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagc > 1:967970‑M2/1‑146 (MQ=255) aGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttc > 1:885756‑M2/1‑143 (MQ=255) gcCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcagg > 1:1211446‑M2/1‑140 (MQ=255) tGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcc > 2:243326‑M2/1‑137 (MQ=255) tGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCagcttcagcttc > 1:954313/1‑150 (MQ=255) gCGGATCAAGTTGCTCGCGCACTTCCAGCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcct > 1:259523‑M2/1‑136 (MQ=255) gCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAgcttcagcttca < 2:717198/150‑1 (MQ=255) tCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCTACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaag > 1:984059‑M2/1‑131 (MQ=255) ggTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTAAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCAAGACTTTGCGCCAGCTTCAGCTTCAGGTCCTGGa > 2:266154/1‑150 (MQ=255) cTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagca > 2:1202076‑M2/1‑123 (MQ=255) cgcgCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagc > 1:232325‑M2/1‑121 (MQ=255) gcACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaa > 2:238731‑M2/1‑118 (MQ=255) ttCCATCAGGGTGTGCAGGGTGGTGTCGAAGAACTTGAGGGAGTGGGCAGCAACCGTATGGTGTTCGTGGGTGAGGAAATGCCCCTAGCTGGCCCTGGCAGCCAGGCTTTGCGC‑‑‑‑‑‑CAGCTTCAGGTCCTGGAAGCCCGAGCGGCCGATGGc > 1:292115/1‑150 (MQ=255) ccATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCaa < 2:1097895/150‑1 (MQ=255) tCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCTAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATgg < 1:541276/150‑1 (MQ=255) gggTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcgcggcaga < 2:1048763‑M2/150‑45 (MQ=255) gggTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcaga < 2:201027‑M2/150‑45 (MQ=255) gtgtGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgag > 1:666551‑M2/1‑104 (MQ=255) gtgtGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgag < 2:666551‑M2/129‑26 (MQ=255) gCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcgcggcagaaacgca > 1:1048763‑M2/1‑100 (MQ=255) gAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctc < 1:1158296‑M2/150‑64 (MQ=255) gAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGt > 1:14520/1‑150 (MQ=255) tAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctgga > 1:13439‑M2/1‑71 (MQ=255) tAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctgga < 2:13439‑M2/88‑18 (MQ=255) aCCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGCGCGGGCGATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTgc < 2:954313/150‑1 (MQ=255) aCCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCGTCAGGTCCTGGAAGCCTGAGCTGCGAATGGCCAGGCAGAAACGCACGCTGGTCGCCTCACCGATAGCGCCGCtgtga > 1:1110495/1‑149 (MQ=255) cGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatc < 2:596645‑M2/150‑91 (MQ=255) cGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggcca > 1:596645‑M2/1‑55 (MQ=255) ttCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatgga < 1:1104637‑M2/150‑100 (MQ=255) ttCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggc < 1:883576‑M2/144‑94 (MQ=255) ttCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggc > 2:883576‑M2/1‑51 (MQ=255) gTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagct > 2:1158296‑M2/1‑48 (MQ=255) gCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcagggaaagagtgtcgcttatacccacgctgtgcgccaaatcggccatggagctgtgcatg < 2:675377‑M2/150‑110 (MQ=255) aCTGACCGAAGCTGGCCCCGGAACCCGCTCTTTGTCCcagtttcaggtccgggaggcctgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacgg > 2:1104637‑M2/1‑37 (MQ=255) aaGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccggg < 1:691985‑M2/150‑122 (MQ=255) ggCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCgg < 2:14520/150‑1 (MQ=255) gCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggcca > 2:515023‑M2/1‑23 (MQ=255) gCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggcca < 1:515023‑M2/118‑96 (MQ=255) cccGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCgg > 2:134438/1‑147 (MQ=255) cccGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCgg < 1:134438/147‑1 (MQ=255) gCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGTCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTCCATGACGGCAGCCGGGTCGagc > 2:396060/1‑150 (MQ=255) gCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgggtcgagcagcacgtggtcggc > 1:467661‑M2/1‑9 (MQ=255) cgccagcttcaggtcctggaagcccgagcagccaatgacccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggaactgtgcatgacggcagccgggtcgagcagcacgtggtcggccacttt < 1:1041628‑M2/150‑148 (MQ=255) gccagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgggtcgagcagcacgtggtcggccactttc > 1:201027‑M2/1‑2 (MQ=255) gccagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcaaccgggtcgagcagcacgtggtcggccactttc < 2:102945‑M2/150‑149 (MQ=255) | TTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCC > NC_002947/6098785‑6099082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |