New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	258497 =	51 (1.040)	5 (0.110)	5/232	NT	10.2%	coding (31/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
	?	NC_002947	258529 =	41 (0.900)					coding (63/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein

CCTCCTGCTGTGCCCCTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCGCACGACGGCAAGTACAAGGACGCCACCTACCAGGTCGAGTGGA  >  NC_002947/258380‑258674                                                                                                                                                      |                                                                                                                                                  tacttgccgtcgtgcggcaggtacttgtccagcaggcccagctcacggatcagcaggccaccggtggcgcagttgatggtggtgtcctgggtgccgatggcgatgcgtatggtttcgGCGCTGGCGCTCACTGGCCTGAACGCCAGCGcc                                                                                                                                                   >  1:402647‑M1/118‑150 (MQ=255)      tgctgTGCCCCTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAAc                                                                                                                                              <  1:309318/150‑1 (MQ=255)      tgctgTGCCCCTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAAc                                                                                                                                              <  2:299013/150‑1 (MQ=255)              cccTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTCTAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCa                                                                                                                                      >  1:732662/1‑150 (MQ=255)                cTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCAt                                                                                                                                           <  1:744777/143‑1 (MQ=255)                cTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCAt                                                                                                                                           >  2:744777/1‑143 (MQ=255)                cTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATc                                                                                                                                    >  1:172749/1‑150 (MQ=255)                     ttCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCAt                                                                                                                               <  1:652186/150‑1 (MQ=255)                      tCCCACCACCCAAGCCGGGCGGCGGAGATGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATc                                                                                                                              <  1:1640/150‑1 (MQ=255)                      tCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATc                                                                                                                              <  2:642502/150‑1 (MQ=255)                        ccaccaCCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCgg                                                                                                                            >  1:534358/1‑150 (MQ=255)                         caccacCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGc                                                                                                                           >  1:1171643/1‑150 (MQ=255)                            caccCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCAcc                                                                                                                        >  2:558296/1‑150 (MQ=255)                            caccCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAAAGCCAGCGCCGAAACCATACGCCTCGCCATCGGCAcc                                                                                                                        >  2:425387/1‑150 (MQ=255)                               ccAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAg                                                                                                                     <  2:1207780/150‑1 (MQ=255)                                  aGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGac                                                                                                                  >  1:573023/1‑150 (MQ=255)                                   gCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGaca                                                                                                                 >  2:1273380/1‑150 (MQ=255)                                                 aCGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTgc                                                                                                   <  2:290415/150‑1 (MQ=255)                                                         aaCTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACaccacc                                                                                                            <  2:833808/133‑1 (MQ=255)                                                         aaCTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACaccacc                                                                                                            >  1:833808/1‑133 (MQ=255)                                                            tctTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTgg                                                                                        >  1:953843/1‑150 (MQ=255)                                                            tctTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTg                                                                                         >  2:64967/1‑149 (MQ=255)                                                            tctTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTg                                                                                         <  1:64967/149‑1 (MQ=255)                                                              ttATAACGATTCGAGGGGAAACACCCATGCGCCATATGGGAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGcc                                                                                      >  1:425754/1‑150 (MQ=255)                                                               tataACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGGCTTAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCct                                                                                     <  1:476577/150‑1 (MQ=255)                                                                ataACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCctg                                                                                    >  2:875790/1‑150 (MQ=255)                                                                          gAGGGGAAACACCCATGCGCCTTGTGGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTg                                                                          >  2:1043459/1‑150 (MQ=255)                                                                              ggtggtgtcctgggtgccgatggcgatgcgtatggtttcgGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAAc                                                                                                                                              >  1:950538‑M1/41‑78 (MQ=255)                                                                              ggtggtgtcctgggtgccgatggcgatgcgtatggtttcgGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAAc                                                                                                                                              <  2:950538‑M1/38‑1 (MQ=255)                                                                                   cacCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGcc                                                                 <  2:732662/150‑1 (MQ=255)                                                                                   cacCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGcc                                                                 >  1:302648/1‑150 (MQ=255)                                                                                      ccATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGTTGGGCctgc                                                              <  1:548018/150‑1 (MQ=255)                                                                                      ccATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCctgc                                                              <  2:969018/150‑1 (MQ=255)                                                                                       cATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCGTGCGCATCGCCATCGGCACCCAGGACACCACCATCACCTGCCCAACCGGTCGCCTGCTGATCCGTGAGCTGGGCctgct                                                             <  1:425387/150‑1 (MQ=255)                                                                                       cATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCctgct                                                             <  2:806602/150‑1 (MQ=255)                                                                                             ccTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCGGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACaa                                                       >  2:858109/1‑150 (MQ=255)                                                                                             ccTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACaa                                                       <  2:573023/150‑1 (MQ=255)                                                                                                  ttgCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTAcc                                                  >  1:88500/1‑150 (MQ=255)                                                                                                             gccggccTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCGGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCGCacgac                                       <  1:858109/150‑1 (MQ=255)                                                                                                                gtttcggcgctggcgttcaggccagtgagcgccagcgcCGAAACCATACGCATCGCCATCGGCACCCAGGACaccacc                                                                                                            >  1:950538‑M2/39‑78 (MQ=255)                                                                                                                gtttcggcgctggcgttcaggccagtgagcgccagcgcCGAAACCATACGCATCGCCATCGGCACCCAGGACaccacc                                                                                                            <  2:950538‑M2/40‑1 (MQ=255)                                                                                                                     ggcgctggcgttcaggccagtgagcgccagcgcCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCGCACGACGGCAAGTa                               >  1:402647‑M2/34‑150 (MQ=255)                                                                                                                     cgcgCTGGCGCGCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCGACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCGCACGACGGCAAGTa                               <  2:534358/150‑1 (MQ=255)                                                                                                                      GCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCGCACGACGGCAAGTAc                              >  1:1273380‑M1/1‑150 (MQ=255)                                                                                                                         ctggcgttcaggccagtgagcgccagcgcCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATcc                                                                             >  2:975284‑M2/30‑100 (MQ=255)                                                                                                                         ctggcgttcaggccagtgagcgccagcgcCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATcc                                                                             <  1:975284‑M2/71‑1 (MQ=255)                                                                                                                                 cACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAg                                                      >  2:1007156/1‑115 (MQ=255)                                                                                                                                 cACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAg                                                      <  1:1007156/115‑1 (MQ=255)                                                                                                                                  aCTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTAcc                                                  <  2:845316/118‑1 (MQ=255)                                                                                                                                  aCTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTAcc                                                  >  1:845316/1‑118 (MQ=255)                                                                                                                                         tGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACAGGTGGCCTGCTGATCCGTGAGATGGGCCTGCTGGACAAGTACCTGCCGCACGACGGCAAGTACAAGGACGCCACCTACCAgg           >  1:1262176/1‑150 (MQ=255)                                                                                                                                             cgccagcgcCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCGCACGACGGCAAGTACAAGGACGCCACCTACCAGGTCGa       >  1:745936‑M2/10‑150 (MQ=255)                                                                                                                                                 agcgcCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCGCACGACGGCAAGTACAAGGACGCCACCTACCAGGTCGAGTgg   <  2:302648‑M2/145‑1 (MQ=255)                                                                                                                                                 agcgcCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCGCACGACGGCAAGTACAAGGACGCCACCTACCAGGTCGAGTgg   >  2:1141330‑M2/6‑150 (MQ=255)                                                                                                                                                  gcgcCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCGCACGACGGCAAGTACAAGGACGCCACCTACCAGGTCGAGTGga  >  2:881884‑M2/5‑150 (MQ=255)                                                                                                                                                  gcgcCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCGCACGACGGCAAGTACAAGGACGCCACCTACCAGGTCGAGTGga  <  1:881884‑M2/146‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  CCTCCTGCTGTGCCCCTCGTTTCCCACCACCCAAGCCGGGCGGCGGAGACGAAGCCAACTCTTATAACGATTCGAGGGGAAACACCCATGCGCCTTGTTGCAACCGTGGCCGGCCTCGCGCTGGCGCTCACTGGCCTGAACGCCAGCGCCGAAACCATACGCATCGCCATCGGCACCCAGGACACCACCATCAACTGCGCCACCGGTGGCCTGCTGATCCGTGAGCTGGGCCTGCTGGACAAGTACCTGCCGCACGACGGCAAGTACAAGGACGCCACCTACCAGGTCGAGTGGA  >  NC_002947/258380‑258674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.