New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 280199 | 31 (0.630) | 7 (0.160) | 7/228 | NT | 18.4% | coding (51/669 nt) | sctS | sulfur compound ABC transporter permease |
? | NC_002947 | = 280204 | 34 (0.760) | coding (46/669 nt) | sctS | sulfur compound ABC transporter permease |
CGGAAGAACGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTCCGGC > NC_002947/280059‑280351 | cgGAAGAACGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGgaag > 2:935074‑M2/1‑146 (MQ=255) gaaCGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGgaagggcgc > 2:728189‑M2/1‑141 (MQ=255) aaCGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGgaagggcgcg > 2:130442‑M2/1‑140 (MQ=255) aaCGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGgaagggcgcg < 1:422022‑M2/150‑11 (MQ=255) aCGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGGGCAGCACCGTATAACCCGCGCCCTTCA‑GCAAgaaaggcgcgg < 2:74924‑M2/150‑12 (MQ=255) cGACACGTAGACACGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGa < 1:263489/150‑1 (MQ=255) acacGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGt < 1:568717/150‑1 (MQ=255) cccGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACgc < 1:53744/150‑2 (MQ=255) ccGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGg < 2:97984‑M2/127‑2 (MQ=255) ccGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGg > 1:97984‑M2/1‑126 (MQ=255) ccGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAg < 2:1098581/150‑1 (MQ=255) cagccagTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAg > 2:1145660/1‑150 (MQ=255) gACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACAt < 1:895841/150‑1 (MQ=255) gACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACAt > 2:271717/1‑150 (MQ=255) accgCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGGATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCGGCGATCATTTGGTAACATc > 1:316405/4‑150 (MQ=255) cGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCAc < 1:469525/150‑1 (MQ=255) cATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTc < 2:116951/123‑1 (MQ=255) cATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTc > 1:116951/1‑123 (MQ=255) aTCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGGCACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGa > 2:944322/1‑150 (MQ=255) gCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCgg > 1:1229988/1‑150 (MQ=255) aaGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCCTGCTGaagggcgcgggttatacg < 2:384431‑M2/90‑19 (MQ=255) aaGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCCTGCTGaagggcgcgggttatacg > 1:384431‑M2/1‑72 (MQ=255) gCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGc < 2:542500/150‑1 (MQ=255) gCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGc < 1:1145660/150‑1 (MQ=255) cAGACCGAAGAACAGGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCCATCATGTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGc < 1:474956/150‑1 (MQ=255) aGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCCTGCTGaagggcgcgggttatacggtgctgctcagt < 2:549910‑M2/90‑31 (MQ=255) aGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCCTGCTGaagggcgcgggttatacggtgctgctcagt > 1:549910‑M2/1‑60 (MQ=255) aagaaCATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCAt > 1:586211/1‑150 (MQ=255) tGCCGCCGGCACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCttt < 1:944322/150‑1 (MQ=255) acacTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGt > 2:385786/1‑150 (MQ=255) tGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTg > 2:586459/1‑127 (MQ=255) tGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTg < 1:586459/127‑1 (MQ=255) tGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGAt > 1:759643/1‑150 (MQ=255) gAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATg < 1:74924/150‑1 (MQ=255) cagcaCCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGcc < 2:422022/150‑1 (MQ=255) gcaCCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCtt > 1:436254/1‑150 (MQ=255) caCCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCttg > 2:1093770/1‑150 (MQ=255) caCCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCttg > 1:923747/1‑150 (MQ=255) taACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATgg < 2:1229988/150‑1 (MQ=255) taACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATgg < 1:714130/150‑1 (MQ=255) taACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATgg < 1:1244228/150‑1 (MQ=255) aCCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCt < 1:271717/150‑1 (MQ=255) cgcCCTTCA‑GCAGgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgctgaactggctggcgcgggtctacgtgtcgttct < 2:199686‑M2/150‑138 (MQ=255) gcCCTTCA‑GCAGgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgc > 2:960582‑M2/1‑12 (MQ=255) gcCCTTCA‑GCAGgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgc < 1:960582‑M2/116‑105 (MQ=255) ccTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGc < 2:703367/96‑1 (MQ=255) ccTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGc > 1:703367/1‑96 (MQ=255) ttCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGtt > 2:504661/1‑150 (MQ=255) tCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTc < 2:436254/150‑1 (MQ=255) tCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTc < 1:1093770/150‑1 (MQ=255) a‑gcagGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTCCg < 1:504661/150‑1 (MQ=255) gcagGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTCCgg > 1:562502/1‑150 (MQ=255) cagGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCCACAGTTCCGGc > 1:696414/1‑150 (MQ=255) cagGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTCCGGc > 2:591629/1‑150 (MQ=255) agGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTCCgg < 1:448573/148‑1 (MQ=255) agGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTCCgg > 2:448573/1‑148 (MQ=255) ggAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGTCAGCGTGCCATCAGCTTTGa > 2:538851/1‑107 (MQ=255) ggAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGTCAGCGTGCCATCAGCTTTGa < 1:538851/107‑1 (MQ=255) | CGGAAGAACGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTCCGGC > NC_002947/280059‑280351 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |