New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 942551	NA (NA)	3 (0.070)	3/234	NT	9.1%	coding (3074/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 942587	32 (0.650)					coding (3038/18933 nt)	PP_0806	surface adhesion protein

TGCTGCCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTGAAGCTGCCATCGGCGTTGGCAATGGCACTGCCAATCAACGT  >  NC_002947/942507‑942735                                                                                 |                                                                                                                                                      ggctgcCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCcagca                                                                                  <  1:1089581/149‑1 (MQ=17)    tgcCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGtt                                                                               <  2:1009159/150‑1 (MQ=32)    tgcCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGtt                                                                               >  1:959019/1‑150 (MQ=32)     gcCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTc                                                                              <  1:610591/150‑1 (MQ=32)       ccGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGc                                                                            >  1:1234556/1‑150 (MQ=32)         ggTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCg                                                                          >  1:126545/1‑150 (MQ=32)               gCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGGAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCt                                                                    >  1:651124/1‑150 (MQ=17)                 aCGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTtg                                                                  >  2:645585/1‑150 (MQ=32)                    gCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGAGGCCGGGGCGGTGCTCTCGGGTGTGCGGGTCTGTTTGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGc                                                               <  2:1109565/150‑1 (MQ=11)                      cGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCgg                                                             >  1:830203/1‑150 (MQ=32)                      cGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCgg                                                             >  2:778434/1‑150 (MQ=32)                        gTGATAACGCTGCCGTCCGCGCTCACCGCCAGGTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGAGGGCGGCGACGCAGCTCGGGCCATATGTTTGGCGACCACGTCCAGCAGTTCGCCCTTGGCTTGTGCGGG‑a                                                          <  2:1008850/150‑1 (MQ=11)                          gatctcGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCATGGGCTATGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑Att                                                        <  2:359027/145‑1 (MQ=255)                             aaCGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAg                                                     <  2:266779/150‑1 (MQ=32)                               cGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGtt                                                   <  2:527987/150‑1 (MQ=32)                                gCTGCCGTCCGCGCTCACCGCCGGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTc                                                  >  1:840083/1‑150 (MQ=17)                                gCTGCCGTCCGCGCTCACCGCCAGTTAGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCGAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAgatc                                                  >  1:359027/1‑147 (MQ=12)                                gCTGCCGTCCGCGCTCACCGCCAGAACGGTCGGTGCGGCAGGGGCGGTGGTTTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTCAGCTTGTGCGGG‑ATTCAGTTc                                                  >  2:352167/1‑150 (MQ=11)                                 cTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCg                                                 >  2:863597/1‑150 (MQ=32)                                  tGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGa                                                >  1:787988/1‑150 (MQ=32)                                   gCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGAt                                               <  2:131153/150‑1 (MQ=32)                                       tCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTg                                           >  2:1191494/1‑150 (MQ=32)                                        ccGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGc                                                               <  1:1078356/130‑1 (MQ=33)                                        ccGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGc                                                               >  2:1078356/1‑130 (MQ=33)                                          gcgcTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGAgcgcggacggcagcgttatcaccggccgtgccgaaccgggcagcaccgtgcgcatcgtggctgccgacggaaccgaactgggcactgccgtggtcggcccgaccggcgtg                                         <  2:598491‑M2/150‑111 (MQ=255)                                           cgcTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGAgcgcggacggcagcgttatcaccggccgtgccgaaccgggcagcaccgtgcgcatcgtggctgccgacggaaccgaactgggcactgccgtg                                                           <  1:313867‑M2/131‑93 (MQ=255)                                           cgcTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGAgcgcggacggcagcgttatcaccggccgtgccgaaccgggcagcaccgtgcgcatcgtggctgccgacggaaccgaactgggcactgccgtg                                                           >  2:313867‑M2/1‑39 (MQ=255)                                              tCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTGAAGCTGc                                    <  1:645585/150‑1 (MQ=32)                                                 ccGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTGAAGCTGCCAt                                 <  2:1234556/150‑1 (MQ=32)                                                  cGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTGAAGCTGCCATc                                >  2:932442/1‑150 (MQ=32)                                                       gTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTGAAGCTGCCATCGGCGt                           <  2:787988/150‑1 (MQ=32)                                                       gTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTGAAGCTGCCATCGGCGt                           <  2:840083/150‑1 (MQ=32)                                                         tcggtcggTGCGGCAGGCGCGTTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTGAAGCTGCCATCGGCGTTg                         <  1:1029199/150‑1 (MQ=17)                                                            gtcggtGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTGAAGCTGCCATCGGCGTTGGCa                      >  1:687761/1‑150 (MQ=32)                                                                    ggCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTGAAGCTGCCATCGGCGTTGGCAATGGCACt              <  2:585136/150‑1 (MQ=32)                                                                           gCGGTGAgcgcggacggcagcgttatcaccggccgtgccgaaccgggcagcaccgtgcgcatcgtggctgccgacggaaccgaactgggcactgccgtggtcggcccgaccggcgtgttcagcctcaacctcaacccgccacaagttgac        <  2:371433‑M2/150‑144 (MQ=255)                                                                           gCGGTGAgcgcggacggcagcgttatcaccggccgtgccgaaccgggcagcaccgtgcgcatcgtggctgccgacggaaccgaactgggcactgccgtggtcggcccgaccggcgtgttcagcctcaacctcaa                        <  2:192178‑M2/134‑128 (MQ=255)                                                                           gCGGTGAgcgcggacggcagcgttatcaccggccgtgccgaaccgggcagcaccgtgcgcatcgtggctgccgacggaaccgaactgggcactgccgtggtcggcccgaccggcgtgttcagcctcaacctcaa                        >  1:192178‑M2/1‑7 (MQ=255)                                                                             ggTGAgcgcggacggcagcgttatcaccggccgtgccgaaccgggcagcaccgtgcgcatcgtggctgccgacggaaccgaactgggcactgccgtggtcggcccgaccggcgtgttcagcctcaacctcaacccgccacaagttgacgg      <  2:794404‑M2/150‑146 (MQ=255)                                                                              gTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCTGG‑ATTCAGTTCGATGCTGAAGCTGCCATCGGCGTTg                         >  1:794787/1‑129 (MQ=18)                                                                              gTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCTGG‑ATTCAGTTCGATGCTGAAGCTGCCATCGGCGTTg                         <  2:794787/129‑1 (MQ=18)                                                                              gTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTGAAGCTGCCATCGGCGTTGGCAATGGCACTGCCAATCAAc    >  1:564841/1‑150 (MQ=34)                                                                              gTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTCAGAAGTTGGCTTGTGCGGGCATCGCCTTCGA‑GTCGGGGCTTCCATCGGCGTTGGCAATGGCACTGCCAATCAAc    <  1:863597/150‑1 (MQ=11)                                                                                 agcgcggacggcagcgttatcaccggccgtgccgaaccgggcagcaccgtgcgcatcgtggctgccgacggaaccgaactgggcactgccgtggtcggcccgaccggcgtgttcagcctcaacctcaacccgccacaagttgacggcgaa  >  2:680334‑M2/1‑1 (MQ=255)                                                                                 |                                                                                                                                                      TGCTGCCCGGTTCGGCACGGCCGGTGATAACGCTGCCGTCCGCGCTCACCGCCAGTTCGGTCGGTGCGGCAGGGGCGGTGATGTCGGGCGCGGTGATCTGTGCGGGCAGCGAGGAAACGCCGCCGTCATCGATGGCGACCACGTCCAGCAGTTCGCCGTTGGCTTGTGCGGG‑ATTCAGTTCGATGCTGAAGCTGCCATCGGCGTTGGCAATGGCACTGCCAATCAACGT  >  NC_002947/942507‑942735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.