| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1443111 = | 48 (0.980) | 17 (0.430) | 14/200 | NT | 36.4% | intergenic (‑42/+134) | ghrB/PP_1262 | 2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator |
| ? | NC_002947 | 1443179 = | 21 (0.540) | intergenic (‑110/+66) | ghrB/PP_1262 | 2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator | |||||
CGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGAGTTGCGCAG > NC_002947/1443031‑1443322 | cGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCTGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTg > 2:318403/1‑150 (MQ=255) ggTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCg < 2:1204362/150‑1 (MQ=255) aTACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAAc < 1:546961/150‑1 (MQ=255) gCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAg < 2:676264/147‑1 (MQ=255) gCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAg > 1:676264/1‑147 (MQ=255) aaagccgctgcaatgcgggggcggacaatggcaggttgctaaccattgttttcgcctgtgctggtcCCTTCGCGGGCAAGCCCGCCCCTCCGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGaa > 1:307392‑M1/67‑150 (MQ=255) gCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCaa < 2:30101/150‑1 (MQ=255) cAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGAGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATg > 2:171977/1‑150 (MQ=255) gACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGGCGTTGCTTGGTAGGGGGGGCCTGCCCCGCAAAGGTGCCGAACCAGCGGAAATCATTGGt > 2:132998/1‑150 (MQ=255) gTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCa > 1:1166838/1‑150 (MQ=255) aTCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCAt > 1:548544/1‑150 (MQ=255) gggCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTg < 1:987030/110‑1 (MQ=255) gggCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTg > 2:987030/1‑110 (MQ=255) cTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGt > 1:431776/1‑144 (MQ=255) cTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGt < 2:431776/144‑1 (MQ=255) gggTGGGGCGGTGCGGGTCTTTTCCCGGCGAAGCCCGCTCCTCCGGGGGGGG‑GCGGTGCCTTGTAGTAGCTGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCagcagc < 2:324675/150‑1 (MQ=255) ttcgcctgttccggcaccttcgcgggcaagcccgctcctacaaggcaccgcgcccccccggaggggcgggcttgcccgcgaaggGACCAGCACAGGCGAAAACAATGGTTAGCAACCTGCCATTGTCCGCCCCCGCATTGCAGCGGCttt > 1:307392‑M2/85‑150 (MQ=255) ggCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTa < 1:360208/150‑1 (MQ=255) gCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAAcc > 2:192298/1‑113 (MQ=255) gCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAAcc < 1:192298/113‑1 (MQ=255) tgtgCTGGTCCCTTCGCGGGCAAGCCCGCTCCTAAGAGGGGGC‑GCGGTGACTCGTAGGAGGGGGCATGCGCGAGAAGGTGCCGGAACAGGCGACATCAAACGTTAGCACCGTCACACTGCACGCAACCGCATTTGAGCAGCTCTTCAGtt > 2:64837/1‑150 (MQ=255) gCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCCATGGTTAGCAACCTATCATTGTCCGCCCCCGCATTGCAGCAGCGTTTTatggggc > 1:185513/1‑144 (MQ=39) cTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCg < 2:1206606/150‑1 (MQ=255) tGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGt > 2:1061677/1‑74 (MQ=255) tGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGt < 1:1061677/74‑1 (MQ=255) cttcgcgggcaagcccgctcctacaaggcaccgcgcccccccgtaggcgcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTACCAACCTACAATTGTCCGCCCCCGCATTGCAGCAGCTTCGTACTCGGCGCgcagca > 2:159376‑M2/68‑150 (MQ=255) AAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGt > 1:539261‑M1/1‑128 (MQ=255) AAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGt < 2:539261‑M1/128‑1 (MQ=255) aagcccgctcctacaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGt > 1:279230‑M2/58‑150 (MQ=255) gcccgctcctacaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGttt > 1:1216732‑M2/56‑150 (MQ=255) gcccgctcctacaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGttt > 2:1020891‑M2/56‑150 (MQ=255) CCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTATGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTgg < 2:374538‑M1/128‑1 (MQ=255) CCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTgg > 1:374538‑M1/1‑128 (MQ=255) cccgctcctacaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGtttt < 1:285153‑M2/96‑1 (MQ=255) cccgctcctacaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGtttt > 2:285153‑M2/55‑150 (MQ=255) CCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGtttt < 2:980702‑M1/149‑1 (MQ=255) CCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGtttt > 1:980702‑M1/1‑149 (MQ=255) CGCTCGGACGGGGGGGC‑GCGGTGCCTTGTAGGGGGGGGCTAGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCa > 2:1254161‑M1/1‑150 (MQ=255) gctcctacaaggcaccgcgccccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGAt < 2:71912‑M2/78‑1 (MQ=255) gctcctacaaggcaccgcgccccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGAt > 1:71912‑M2/53‑130 (MQ=255) cggtcctacagggcaccgggcccccccgtaggagcgggcttgcccgcgaaggGACCAGCACAGGCGAAATCAATGGTTAGCAAGCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCa < 2:307392‑M2/98‑1 (MQ=255) GCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAg < 1:1148117‑M1/150‑1 (MQ=255) gctcctacaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAg > 1:1170300‑M2/52‑150 (MQ=255) cctacaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTc < 1:159376‑M2/102‑1 (MQ=255) acaaggcaccgcgcccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGc > 1:184903‑M2/46‑150 (MQ=255) CGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGcc > 1:789458‑M1/1‑150 (MQ=255) caaggcaccgcgcccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTa < 2:1213133‑M2/27‑1 (MQ=255) caaggcaccgcgcccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTa > 1:1213133‑M2/45‑71 (MQ=255) gggggC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAACAACCTACCATTGTCCGCCCCAGCATTGCAGCAGCTTTTTAGTTGAAGATCAGTCCATGATGGGTTGTCAGGTCTGGCTcg > 2:525531/1‑149 (MQ=255) gc‑gcGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGc < 1:503643/50‑1 (MQ=255) gc‑gcGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGc > 2:503643/1‑50 (MQ=255) gcgGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGcgcg < 2:1148117/150‑1 (MQ=255) ccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCaa < 2:1216732‑M2/119‑1 (MQ=255) ccccccgtaggagcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCaa < 1:1020891‑M2/119‑1 (MQ=255) ggcagcgggcttgcccgcgacggTACCGGAACAGGCGAACCCAATGGTTAGCAACCTACCATCGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATctct < 1:511792‑M2/127‑1 (MQ=255) agcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATgcgc > 1:992856‑M2/21‑134 (MQ=255) agcgggcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATgcgc < 2:992856‑M2/114‑1 (MQ=255) gcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGa < 1:913051‑M2/135‑1 (MQ=255) gcttgcccgcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGa > 1:368090‑M2/16‑150 (MQ=255) ccccagggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATTAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGAGTTgcgc < 1:64837‑M2/142‑1 (MQ=255) gcgaaggTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGAGTTGCGCa < 2:548544‑M2/143‑1 (MQ=255) ctaaggTGCCGGAACAGGCGAAATCAATGGTTAGAAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGAGTTGCGCAg < 1:525531‑M2/144‑1 (MQ=255) | CGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACGGGGGGGC‑GCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGTGCCGGAACAGGCGAAATCAATGGTTAGCAACCTACCATTGTCCGCCCCCGCATTGCAGCAGCTTTTTAGTTGGCGATCAGCACCTGATGGGTTTTCAGGTCTGCCTCATGCGCGGCAAGAATCTCTGGCAGCGAGTTGCGCAG > NC_002947/1443031‑1443322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |