New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1542794	50 (1.020)	3 (0.060)	3/236	NT	6.1%	coding (532/849 nt)	PP_1353	membrane protein
	?	NC_002947	= 1542815	45 (0.970)					coding (553/849 nt)	PP_1353	membrane protein

GCAGGGCGTTGCCGGCACCGTCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCAGGCGGTCGTGTCGACGCTGGGCGACAGCTCGATCACCGTAT  >  NC_002947/1542673‑1542962                                                                                                                                                |                                                                                                                                                    gcAGGGCGTTGCCGGCACCGTCGACAGTATCCAGATATTCCAAAACGTAAAATGCACCGGTG‑ACAACAAGACGTTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGtggtgtt                                                                                                                                              <  1:24432‑M2/150‑8 (MQ=255)     ggCGTTGCCGGCACCGTCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGAt                                                                                                                                          <  1:1177373/150‑1 (MQ=255)       cGTTGCCGGCACCGTCGACAGTATCCAGATCTTCCACACCGTGCTGCGCATCTGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGAtgt                                                                                                                                        <  1:718629/150‑1 (MQ=255)         ttGCCGGCACCGTCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCACCGCAGGCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTgg                                                                                                                                      <  1:91546/150‑1 (MQ=255)                          aGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGcc                                                                                                                     <  2:24432/150‑1 (MQ=255)                            tATCCAGATCTTCCACACCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGa                                                                                                                   >  2:550321/1‑150 (MQ=255)                             aTCCAGATCTTCCACAACGCGGTGCAC‑GAGGTGAACAAGAGTACGTTCATCATGCCCAATGGCAGCCTTACCAACTGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGAc                                                                                                                  <  1:1185928/150‑1 (MQ=255)                                cAGATCTTCCACACCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTg                                                                                                               >  2:924501/1‑150 (MQ=255)                                 aGATCTTCCACACCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGGGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGc                                                                                                              >  2:1199816/1‑150 (MQ=255)                                  gATCTTCCACACCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCAATACCACCTCCAACCGCCATCCGACGCGCAAGGTGGTGTTCGATGTAGGCGTGGACTACGAGGCCGACCTGCa                                                                                                             >  2:365368/1‑150 (MQ=255)                                   aTCTTCCACACCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAg                                                                                                            >  1:300401/1‑150 (MQ=255)                                      ttCCACACCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAg                                                                                                         <  2:1266745/150‑1 (MQ=255)                                            acCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGtgg                                                                                                                                                  >  2:945201‑M2/1‑100 (MQ=255)                                            acCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGtgg                                                                                                                                                  <  1:945201‑M2/103‑4 (MQ=255)                                                 gctgcGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAAtgt                                                                                              <  2:300401/150‑1 (MQ=255)                                                        aCCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGt                                                                                                                                  >  1:992756/1‑107 (MQ=255)                                                        aCCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGt                                                                                                                                  <  2:992756/107‑1 (MQ=255)                                                           ggTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGaa                                                                                    <  1:754159/150‑1 (MQ=255)                                                           ggTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGaa                                                                                    <  2:395967/150‑1 (MQ=255)                                                                acaacaAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTgg                                                                                >  1:625538/1‑150 (MQ=255)                                                                  aacaaGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCa                                                                              >  1:387433/1‑150 (MQ=255)                                                                  aacaaGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCa                                                                              >  2:1199995/1‑150 (MQ=255)                                                                   acaaGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCaa                                                                             >  1:808046/1‑150 (MQ=255)                                                                    caaGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCaaa                                                                            >  1:1012010/1‑150 (MQ=255)                                                                                 atGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGtt                                                               >  1:237811/1‑150 (MQ=255)                                                                                  tGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTc                                                              <  1:196788/150‑1 (MQ=255)                                                                                   gCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCgtgt                                                                >  1:1256063/1‑147 (MQ=255)                                                                                   gCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCgtgt                                                                <  2:1256063/147‑1 (MQ=255)                                                                                           gCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGAcc                                                     >  1:366264/1‑150 (MQ=255)                                                                                            cAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCACAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGAccc                                                    >  1:885636/1‑150 (MQ=255)                                                                                                cTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCa                                                >  2:1096720/1‑150 (MQ=255)                                                                                                  gTCCAACGGCATCATTACCAACACCAACCGCCAGTCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCaaa                                                                            <  2:1050086/120‑1 (MQ=255)                                                                                                  gTCCAACGGCATCATTACCAACACCAACCGCCAGTCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCaaa                                                                            >  1:1050086/1‑120 (MQ=255)                                                                                                     cAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCa                                           >  2:390356/1‑150 (MQ=255)                                                                                                        cGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCAGGc                                        <  1:390356/150‑1 (MQ=255)                                                                                                        cGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCAGGc                                        <  1:1199995/150‑1 (MQ=255)                                                                                                         ggCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCAGGCg                                       <  2:1140102/150‑1 (MQ=255)                                                                                                         ggCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCAGGCg                                       <  2:1012010/150‑1 (MQ=255)                                                                                                                  accaacaccaacCGCCAGCCGACGCGCAAGGtggtgttggtaatgatgccgttggacaggctgccattgggcatgatgaccgtcttgttgtcaccggtgcgcagcacggtgtggaagatctggatactgtcgacggtgc                                         >  1:1018361‑M2/1‑31 (MQ=255)                                                                                                                  accaacaccaacCGCCAGCCGACGCGCAAGGtggtgttggtaatgatgccgttggacaggctgccattgggcatgatgaccgtcttgttgtcaccggtgcgcagcacggtgtggaagatctggatactgtcgacggtgc                                         <  2:1018361‑M2/139‑109 (MQ=255)                                                                                                                   ccaacaccaacCGCCAGCCGACGCGCAAGGtggtgttggtaatgatgccgttggacaggctgccattgggcatgatgaccgtcttgttgtcaccggtgcgcagcacggtgtggaagatctggatactgtcgacggtgccggcaacgccct                             <  2:908784‑M2/150‑121 (MQ=255)                                                                                                                    caacaccaacCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAAtgtg                                                                                             <  2:334436/85‑1 (MQ=255)                                                                                                                    caacaccaacCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAAtgtg                                                                                             >  1:334436/1‑85 (MQ=255)                                                                                                                     aacaccaacCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCaaa                                                                            <  2:441832/101‑1 (MQ=255)                                                                                                                     aacaccaacCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCaaa                                                                            >  1:441832/1‑101 (MQ=255)                                                                                                                      acaccaacCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCgtg                                                                 <  2:458525/111‑1 (MQ=255)                                                                                                                      acaccaacCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCgtg                                                                 >  1:458525/1‑111 (MQ=255)                                                                                                                          caacCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCAGGCAGCGGTCTCGACGCTgtg                      >  2:32473/1‑148 (MQ=255)                                                                                                                           aacCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCACAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCAGGCGGTCGTGTCGACGCTGGGc                     <  2:885636/150‑1 (MQ=255)                                                                                                                               gCCAGCCGACGCGTAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCAGGCGGTCGTGTCGACGTTgggtgtga                 <  2:318929/150‑6 (MQ=255)                                                                                                                               gCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGAGTTGCTGGAACTGGCAAAGGACCCGCGTGGTCTGTAAGACCCGGCACCGCAGGCGGTCGTGTCGACGCTGGGCGACa                 >  1:155209/1‑150 (MQ=255)                                                                                                                                           gcAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCAGGCGGTCGTGTCGACGCTGGGCGACAGCTCGATCACCg     >  2:418519/1‑150 (MQ=255)                                                                                                                                              aGGTGGTGTTCGATGTGGGCGTTGGCTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCAGGCGGTCGTGTCGACGCTGGGCGACAGCTCGATCACCGTAt  <  1:840482/150‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    GCAGGGCGTTGCCGGCACCGTCGACAGTATCCAGATCTTCCACACCGTGCTGCGCACCGGTG‑ACAACAAGACGGTCATCATGCCCAATGGCAGCCTGTCCAACGGCATCATTACCAACACCAACCGCCAGCCGACGCGCAAGGTGGTGTTCGATGTGGGCGTTGACTACGAGGCCGACCTGCAGAAGGCCCGCAATGTGTTGCTGGAACTGGCAAAGGACCCGCGTGTTCTGCAAGACCCGGCACCGCAGGCGGTCGTGTCGACGCTGGGCGACAGCTCGATCACCGTAT  >  NC_002947/1542673‑1542962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.