New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2661073 =	44 (0.900)	3 (0.060)	3/244	NT	6.4%	intergenic (‑153/‑154)	PP_2332/PP_2333	hypothetical protein/GntR family transcriptional regulator
	?	NC_002947	2661095 =	45 (0.940)					intergenic (‑175/‑132)	PP_2332/PP_2333	hypothetical protein/GntR family transcriptional regulator

AAGGTTCAGGTCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAGGTGTCGACAATATGCAGGA  >  NC_002947/2660954‑2661234                                                                                                                                              |                                                                                                                                            aaGGTTCAGGTCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGAt                                                                                                                                     >  1:904160/1‑150 (MQ=255)           tCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTgc                                                                                                                                          <  1:408293/135‑1 (MQ=255)           tCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTgc                                                                                                                                          >  2:408293/1‑135 (MQ=255)                    cTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAgttgt                                                                                                                  <  2:904160/150‑1 (MQ=255)                    aactagcgaaacaagacctgcaagacaaagacaaaatgaacattgtcgacaatcgtctaatcgcgaactatcaccacttcaacgctgtcagatcgcgcaccgccgacgtcttgacgccagcgGTGCGCGATCTGACAGCGTTGAAgtggt                                                                                                                  <  2:1202624‑M2/28‑1 (MQ=255)                     tGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTTAAgtggtg                                                                                                                 <  2:438257/150‑1 (MQ=255)                      ggCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGa                                                                                                                <  1:641700/150‑1 (MQ=255)                       gCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGtt                                                                                                                          <  1:603458/139‑1 (MQ=255)                       gCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGtt                                                                                                                          >  2:603458/1‑139 (MQ=255)                         aaTTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAg                                                                                                             >  1:996374/1‑150 (MQ=255)                              cTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTcgc                                                                                                        <  1:752054/150‑1 (MQ=255)                              cTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTcgc                                                                                                        >  1:1160328/1‑150 (MQ=255)                                    aaGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGa                                                                                                                >  2:1216050/1‑136 (MQ=255)                                    aaGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGa                                                                                                                <  1:1216050/136‑1 (MQ=255)                                    aaGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAg                                                                                                  >  1:153415/1‑150 (MQ=255)                                          ccTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAgtg                                                                                                                    <  2:756640/126‑1 (MQ=255)                                          ccTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAgtg                                                                                                                    >  1:756640/1‑126 (MQ=255)                                              gTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAgtgg                                                                                                                   <  2:83746/123‑1 (MQ=255)                                              gTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAgtgg                                                                                                                   >  1:83746/1‑123 (MQ=255)                                                      gTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGtt                                                                                <  2:1070781/150‑1 (MQ=255)                                                         gaacattgtcgacaatcgtctaatcgcgaactatcaccacttcaacgctgtcagatcgcgcaccgccgacgtcttgacgccagcgGTGCGCGATCTGACAGCGtt                                                                                                                          >  1:650723‑M2/86‑105 (MQ=255)                                                         gaacattgtcgacaatcgtctaatcgcgaactatcaccacttcaacgctgtcagatcgcgcaccgccgacgtcttgacgccagcgGTGCGCGATCTGACAGCGtt                                                                                                                          <  2:650723‑M2/20‑1 (MQ=255)                                                              gCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTc                                                                                         <  1:1246860/133‑1 (MQ=255)                                                              gCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTc                                                                                         >  2:1246860/1‑133 (MQ=255)                                                              gCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGt                                                                        >  2:372378/1‑150 (MQ=255)                                                                aCGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCt                                                                      >  1:112861/1‑150 (MQ=255)                                                                aCGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCt                                                                      >  2:184827/1‑150 (MQ=255)                                                                aCGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCt                                                                      <  2:153415/150‑1 (MQ=255)                                                                           acagacagGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAg                                                           >  2:522052/1‑150 (MQ=255)                                                                                  ggCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGt                                                    >  1:1044528/1‑150 (MQ=255)                                                                                   gCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAgg                                                          <  2:221974/143‑1 (MQ=255)                                                                                   gCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAgg                                                          >  1:221974/1‑143 (MQ=255)                                                                                      aTCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCg                                                <  2:1160328/150‑1 (MQ=255)                                                                                          aTACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAg                                            >  1:211860/1‑150 (MQ=255)                                                                                           tACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGt                                           >  2:535550/1‑150 (MQ=255)                                                                                            accacttcaacgctgtcagatcgcgcacCGCTGGCGTCAAGACGTCGGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGTCTTGCAGGTCTTGTTTCGCTAGtt                                          <  2:1202624‑M1/122‑1 (MQ=255)                                                                                             ccccATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGttt                                         <  1:372378/150‑1 (MQ=255)                                                                                              cccATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCAtt                                                                            <  1:361363/114‑1 (MQ=255)                                                                                              cccATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCAtt                                                                            >  2:361363/1‑114 (MQ=255)                                                                                                    aacgctgtcagatcgcgcacCGCTGGCGTCAAGACGTCGGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTc                                                                               <  2:650723‑M1/85‑1 (MQ=255)                                                                                                    aacgctgtcagatcgcgcacCGCTGGCGTCAAGACGTCGGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTc                                                                               >  1:650723‑M1/21‑105 (MQ=255)                                                                                                     gAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCaa                                 <  2:112861/150‑1 (MQ=255)                                                                                                        gcgcGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAagag                              >  1:803101/1‑150 (MQ=255)                                                                                                          gcgGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGtt                            >  1:299569/1‑150 (MQ=255)                                                                                                           atctaTTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGGCCAAGAGttt                           <  2:348911/146‑1 (MQ=255)                                                                                                            ggCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGtttt                          <  2:803101/150‑1 (MQ=255)                                                                                                                 tCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAg                     <  2:211860/150‑1 (MQ=255)                                                                                                                     tCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAGgtgt                 <  2:299569/150‑1 (MQ=255)                                                                                                                           cGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAGGTGTCGACaa           <  2:1044528/150‑1 (MQ=255)                                                                                                                               gTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAGgtgt                 >  1:1237219/1‑140 (MQ=255)                                                                                                                               atCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAGgtgt                 <  2:1237219/139‑1 (MQ=255)                                                                                                                                 cTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAGGTGTCGACAATATGCa     <  1:241140/150‑1 (MQ=255)                                                                                                                                    gACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAGGTGTCGACAATATGCAGGa  >  1:669512/1‑150 (MQ=255)                                                                                                                                              |                                                                                                                                            AAGGTTCAGGTCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAGGTGTCGACAATATGCAGGA  >  NC_002947/2660954‑2661234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.