New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3991356	45 (0.920)	4 (0.080)	4/240	NT	8.1%	coding (315/894 nt)	PP_3517	hypothetical protein
	?	NC_002947	= 3991373	47 (1.000)					coding (298/894 nt)	PP_3517	hypothetical protein

TCGTGATAGGCCAACAGCGACTGCAGAACACCCAGCTCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGC  >  NC_002947/3991228‑3991517                                                                                                                                                   |                                                                                                                                                 tCGTGATAGGCCAACAGCGACTGCAGAACACCCAGCTCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCgccc                                                                                                                                              >  1:1102364‑M2/1‑146 (MQ=255)     gATAGGCCAACAGCGACTGCAGAACACCCAGCTCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCACCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCg                                                                                                                                          >  2:611560/1‑150 (MQ=255)        aGGCCAACAGCGACTGCAGAACACCCAGCACGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCa                                                                                                                                       >  1:561375/1‑150 (MQ=255)            cAACAGCGACTGCAGAACACCCAGCTCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGAt                                                                                                                                   <  1:365089/150‑1 (MQ=255)                    aCTGCAGAACACCCAGCTCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGc                                                                                                                           >  1:1112799/1‑150 (MQ=255)                       gCAGAACACCCAGCTCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGATCGGCGCCCACCGCCAGGATGGCCTTGCCCt                                                                                                                        >  2:1096312/1‑150 (MQ=255)                        cAGAACACCCAGCTCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTTACCGGCGCCCACCGCCAGGATGGCCTTGCCCTc                                                                                                                       >  2:838143/1‑150 (MQ=255)                                 cAGCGCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCGCCGGTCACTGGACCTGcccataccgctgaccagaaccagccagggctggcg                                                                                                                >  2:353342‑M2/1‑115 (MQ=255)                                  aGCTCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATg                                                                                                             >  1:560493/1‑150 (MQ=255)                                    cTCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTc                                                                                                           <  2:1112799/150‑1 (MQ=255)                                     tCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTTACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCg                                                                                                          <  1:838143/150‑1 (MQ=255)                                        ttGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGAtg                                                                                                       >  1:1166804/1‑150 (MQ=255)                                           cgcCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTCCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGAtgctg                                                                                                    <  1:60780/150‑1 (MQ=255)                                            gcCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGAtgctgt                                                                                                   <  2:645149/150‑1 (MQ=255)                                                 aTACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATgctgtgctgt                                                                                              <  1:402326/150‑1 (MQ=255)                                                         ggCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATa                                                                                      >  2:1207335/1‑150 (MQ=255)                                                         ggCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCAACCGGTATGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATa                                                                                      <  1:1055336/150‑1 (MQ=255)                                                           cgcgGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACt                                                                                    <  1:275220/150‑1 (MQ=255)                                                                     ggCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGaaa                                                                          <  2:1084843/150‑1 (MQ=255)                                                                     ggCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGCCTGGTTCTGCTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCCATGCTGTGCTGTGCGCGATACTGCTCGAGaaa                                                                          >  2:177107/1‑150 (MQ=255)                                                                        aCTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGt                                                                       >  1:774924/1‑150 (MQ=255)                                                                            cccGCCTTGAGGTCGACGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCAACGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATcc                                                                   >  1:594587/1‑150 (MQ=255)                                                                            cccGCCGTGTGGTCGAAGCGCAAGACCTGGCTGGTTCTGGTCAGGGTTATGGGCAA‑TGTCCAGTATTCGGCGCCCACCGCCAGGATCGCCTTGCCCGCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGATAAAGGTATcc                                                                   <  2:61515/150‑1 (MQ=255)                                                                             ccGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGGGATGCTGCTCGAGAAAGGtctcga                                                                  >  2:631385/1‑148 (MQ=255)                                                                             ccGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAg                                                                         <  1:492932/143‑1 (MQ=255)                                                                             ccGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAg                                                                         >  2:492932/1‑143 (MQ=255)                                                                             ccGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTCCTCGAGAAAGGTATCca                                                                  >  2:349291/1‑150 (MQ=255)                                                                                            aGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGca                                                   <  1:1028944/150‑1 (MQ=255)                                                                                             tctccAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGcac                                                  <  1:11405/147‑1 (MQ=255)                                                                                                 cAGCCCTGGCTGGTTCCGGTCAGCGGTATGGGCCA‑GGACCAGTGACCGGCGCCCACCGCCAGGGTGGCCTTGCACTCGCCTGACATGTCGATGCTGTGCTGTGAGCGATGCTGCTCGTGTACGTTATTCACGTTGGTGCGTTGcaaaaga                                              >  2:11405/1‑145 (MQ=255)                                                                                                  aGCCCTGGCTGGATCTGATCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCAcaccac                                             >  2:633664/1‑150 (MQ=255)                                                                                                    cccTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACcg                                           >  1:495345/1‑150 (MQ=255)                                                                                                       tggctggTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACcgcgc                                        <  2:495345/150‑1 (MQ=255)                                                                                                        ggctggTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGaa                                                                           <  1:351218/114‑1 (MQ=255)                                                                                                        ggctggTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGaa                                                                           >  2:351218/1‑114 (MQ=255)                                                                                                            ggTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCgcccataccgctgaccagaaccagccagggctggcgcttcgacctcaaggcgggcagtgccgaaatccgcgcccgtcgtatcgggcgcaacgagctgggtgttctgcagtc                                   >  1:353342‑M2/1‑39 (MQ=255)                                                                                                                cTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAg                               <  2:287437/150‑1 (MQ=255)                                                                                                                  ggTCAGCGGTATGGTTAA‑GTTTCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCAATCAGAAGACGGCATAAGTGTGTGCTGTGCGCGATCCTGCAAGAGAACAGTATTTACATCGTTGCGTTGCACACCACCACGCGGTATGTAGGt                             <  1:611560/150‑1 (MQ=255)                                                                                                                   gTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGa                                                                                                                                    >  1:463821/1‑46 (MQ=255)                                                                                                                   gTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGa                                                                                                                                    <  2:463821/46‑1 (MQ=255)                                                                                                                   gTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCGCTCGCCTGACATGTCGGTGCTGTGCTGTACGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTg                            >  1:930806/1‑150 (MQ=255)                                                                                                                      aGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTgcgc                         >  1:286123/1‑150 (MQ=255)                                                                                                                       gCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGcc                        >  1:114755/1‑150 (MQ=255)                                                                                                                        cGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCa                       >  2:756612/1‑150 (MQ=255)                                                                                                                          gTATGGGCAA‑GGTCCAGTGACCGGCgcccataccgctgaccagaaccagccagggctggcgcttcgacctcaaggcgggcagtgccgaaatccgc                                                                            <  2:880238‑M2/95‑71 (MQ=255)                                                                                                                          gTATGGGCAA‑GGTCCAGTGACCGGCgcccataccgctgaccagaaccagccagggctggcgcttcgacctcaaggcgggcagtgccgaaatccgc                                                                            >  1:880238‑M2/1‑25 (MQ=255)                                                                                                                           tATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTc                    <  2:1166804/150‑1 (MQ=255)                                                                                                                                 cAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGcc              >  2:172844/1‑150 (MQ=255)                                                                                                                                  aa‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAgg                              >  2:443053/1‑133 (MQ=255)                                                                                                                                  aa‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAgg                              <  1:443053/133‑1 (MQ=255)                                                                                                                                   a‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCTCTGCCCTCGCCTGACATGGCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCa            <  2:528568/150‑1 (MQ=255)                                                                                                                                              aCCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATTCTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGc  <  1:631385/150‑1 (MQ=255)                                                                                                                                              aCCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGc  <  1:633664/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 TCGTGATAGGCCAACAGCGACTGCAGAACACCCAGCTCGTTGCGCCCGATACGACGGGCGCGGATTTCGGCACTGCCCGCCTTGAGGTCGAAGCGCCAGCCCTGGCTGGTTCTGGTCAGCGGTATGGGCAA‑GGTCCAGTGACCGGCGCCCACCGCCAGGATGGCCTTGCCCTCGCCTGACATGTCGATGCTGTGCTGTGCGCGATACTGCTCGAGAAAGGTATCCACATCGCTGCGTTGCACACCACCGCGCGGTATGTAGGTGCGCCAGTCATCGCCCAGCAACTGGGC  >  NC_002947/3991228‑3991517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.