New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4847120	50 (1.020)	4 (0.090)	4/230	NT	7.8%	coding (1825/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
	?	NC_002947	= 4847142	49 (1.090)					coding (1847/2475 nt)	PP_4261	cation‑transporting P‑type ATPase

CCCGGCCTGGGCCTGGAGGGGGTGGTCGACGGCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGG  >  NC_002947/4847000‑4847285                                                                                                                                               |                                                                                                                                                cccGGCCTGGGCCTGGAGGGGGTGGTCGACGGCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGgccactg                                                                                                                                          >  2:51312‑M2/1‑143 (MQ=255)    agcctgggcctggaGGGGGTGGTCGCCGGCCAGCGCCTGCGCATTGGTCAGGCTACCGTCGTCTGCGCCTTGAGTCGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGTCAGTGGCTGCTGCTGGGCGACCGCCAGGGgccactggcc                                                                                                                                       >  2:545062‑M2/2‑140 (MQ=255)      cctgggcctggAGGGGGTGGTCGACGGCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTg                                                                                                                                     <  2:486327/150‑1 (MQ=255)                gAGGGGGTGGTCGACGGCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTg                                                                                                                           <  2:767138/150‑1 (MQ=255)                   ggggTGGTCGACGGCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGAt                                                                                                                        <  1:110719/150‑1 (MQ=255)                      gtggtCGACGGCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGAc                                                                                                                     >  1:1105163/1‑150 (MQ=255)                       tggtCGACGGCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGAcc                                                                                                                    >  1:1155237/1‑150 (MQ=255)                            gACGGCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGAGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTg                                                                                                               <  2:1273920/150‑1 (MQ=255)                               ggCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTgcgc                                                                                                            <  1:1277237/150‑1 (MQ=255)                                gCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGAt                                                                                                                        <  1:1076791/137‑1 (MQ=255)                                gCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGAt                                                                                                                        >  2:1076791/1‑137 (MQ=255)                                 ccAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGgccactg                                                                                                                                          >  2:706638‑M2/1‑111 (MQ=255)                                 ccAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGgccactg                                                                                                                                          <  1:706638‑M2/118‑8 (MQ=255)                                       ccTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGGGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGc                                                                                                    <  2:448069/150‑1 (MQ=255)                                        cTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTAGCCTGCTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGcc                                                                                                   <  1:708403/150‑1 (MQ=255)                                             cATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGc                                                                                              <  1:762471/150‑1 (MQ=255)                                              aTTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGcc                                                                                             <  2:1155237/150‑1 (MQ=255)                                                  gTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTg                                                                                                                                     <  2:564565/106‑1 (MQ=255)                                                  gTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTg                                                                                                                                     >  1:564565/1‑106 (MQ=255)                                                  gTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGc                                                                                         <  1:318954/150‑1 (MQ=255)                                                    cAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTc                                                                                       <  2:1105163/150‑1 (MQ=255)                                                       gCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGccc                                                                                            >  2:306104/1‑142 (MQ=255)                                                       gCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGccc                                                                                            <  1:306104/142‑1 (MQ=255)                                                       gCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGct                                                                                    >  1:82337/1‑150 (MQ=255)                                                       gCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGct                                                                                    >  2:706415/1‑150 (MQ=255)                                                         tACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGctgc                                                                                  >  1:1292/1‑150 (MQ=255)                                                            cTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGctgcctg                                                                               >  1:876811/1‑150 (MQ=255)                                                                        cTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCgggg                                                                   >  2:474065/1‑150 (MQ=255)                                                                        cTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCACCGGCCCTGCTCGCTGCGTGCAAGGCGCgggg                                                                   >  2:586965/1‑150 (MQ=255)                                                                                gtgCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGcaca                                                           <  2:1221647/150‑1 (MQ=255)                                                                                gtgCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGAAGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCCCGGGGCTGCcacc                                                           >  2:68346/1‑149 (MQ=255)                                                                                 tgCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCacac                                                          >  2:991683/1‑150 (MQ=255)                                                                                     gAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGct                                                                                    >  1:239110/1‑120 (MQ=255)                                                                                     gAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGct                                                                                    <  2:239110/120‑1 (MQ=255)                                                                                       aaTCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCctgct                                                    <  2:82337/150‑1 (MQ=255)                                                                                           cccGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCAACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCctgctgctg                                                >  2:1099523/1‑150 (MQ=255)                                                                                            ccGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGt                                               >  2:343504/1‑150 (MQ=255)                                                                                             cGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAg                                                                           <  1:158741/121‑1 (MQ=255)                                                                                             cGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAg                                                                           >  2:158741/1‑121 (MQ=255)                                                                                              gCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACCGCCACGGTACGGCCTGCCTATCCGTCTGCATGTCGATGTCTTCTCCCAGCTCGTGGTCGGGTGGGCTCGGTGCTGGCACACCCTGCTGCTGTCg                                             <  2:787503/150‑1 (MQ=255)                                                                                               cTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCgg                                            >  2:322738/1‑150 (MQ=255)                                                                                                   aCCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGa                                        <  1:706415/150‑1 (MQ=255)                                                                                                     ccGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGgccactggccgcgcggctcgggtacagcggggatttccgcaccactcaaggcgcagacgaaggtagcctgac                                                                         <  1:789851‑M2/115‑73 (MQ=255)                                                                                                     ccGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGgccactggccgcgcggctcgggtacagcggggatttccgcaccactcaaggcgcagacgaaggtagcctgac                                                                         >  2:789851‑M2/1‑43 (MQ=255)                                                                                                     ccGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGc                                                                                                                              <  2:1264520/62‑1 (MQ=255)                                                                                                     ccGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGc                                                                                                                              >  1:1264520/1‑62 (MQ=255)                                                                                                     ccGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACa                                      >  2:165270/1‑150 (MQ=255)                                                                                                     ccGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACa                                      <  1:991683/150‑1 (MQ=255)                                                                                                     ccGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAAGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACa                                      >  1:1226346/1‑150 (MQ=255)                                                                                                     ccGAGCCGCGCGGCAAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACa                                      >  1:897964/1‑150 (MQ=255)                                                                                                                ggCCAGTGGCTGCTGCTGGGCGACCGCCAGGGgccactggccgcgcggctcgggtacagcggggatttccgcaccactcaaggcgcagacgaaggtagcctgaccaatgcgcaggcgctggccgtcgaccaccccctccaggcccaggcc                           <  2:1220427‑M2/150‑119 (MQ=255)                                                                                                                     gTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCggg                                                                    >  2:437914/1‑104 (MQ=255)                                                                                                                     gTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCggg                                                                    <  1:437914/104‑1 (MQ=255)                                                                                                                     gTGCCTTCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGc                      <  1:68346/150‑1 (MQ=255)                                                                                                                      tGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGcc                     <  2:876811/150‑1 (MQ=255)                                                                                                                        gctgctgctGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAg                                                                           >  1:859805/1‑94 (MQ=255)                                                                                                                        gctgctgctGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAg                                                                           <  2:859805/94‑1 (MQ=255)                                                                                                                          tgctgctgGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAg                 >  1:686298/1‑150 (MQ=255)                                                                                                                               ctgGGCGACCGCCAGGGgccactggccgcgcggctcgggtacagcggggatttccgcaccactcaaggcgcagacgaaggtagcctgaccaatgcgcaggcgctggccgtcgaccaccccctccaggcccaggccgggtacgctctgtac            >  1:1220427‑M2/1‑17 (MQ=255)                                                                                                                                         gCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTgg  >  1:306375/1‑150 (MQ=255)                                                                                                                                               |                                                                                                                                                CCCGGCCTGGGCCTGGAGGGGGTGGTCGACGGCCAGCGCCTGCGCATTGGTCAGGCTACCTTCGTCTGCGCCTTGAGTGGTGCGGAAATCCCCGCTGTACCCGAGCCGCGCGGCCAGTGGCTGCTGCTGGGCGACCGCCAGGGGCCACTGGCCTGGTTCGGCCTGGATGACCGCCTGCGCGACGATGCCCCGGCCCTGCTCGCTGCCTGCAAGGCGCGGGGCTGGCACACCCTGCTGCTGTCGGGCGACAGCTCGCCGATGGTTGCCGAAGTGGCCGCGCAGCTGG  >  NC_002947/4847000‑4847285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.