New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4889902	48 (0.980)	4 (0.080)	4/240	NT	8.1%	coding (151/894 nt)	glxR	2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	= 4889909	45 (0.960)					coding (158/894 nt)	glxR	2‑hydroxy‑3‑oxopropionate reductase

ATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAGGTGGTGATCGACATGAGCTCGATCTCGC  >  NC_002947/4889761‑4890046                                                                                                                                                     |                                                                                                                                          aTCGTTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAg                                                                                                                                          >  1:535763‑M2/1‑149 (MQ=255)       ttCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGcc                                                                                                                                    >  1:815309/1‑150 (MQ=255)          aTCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAg                                                                                                                                 >  1:1106523/1‑150 (MQ=255)           tCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAg                                                                                                                                          <  2:1241917‑M2/140‑2 (MQ=255)           tCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAg                                                                                                                                          >  1:1241917‑M2/1‑139 (MQ=255)                aCCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGcc                                                                                                                           >  2:1200108/1‑150 (MQ=255)                        catGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATtcat                                                                                                                   <  2:815309/150‑1 (MQ=255)                                      tGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTcc                                                                                                     <  1:768021/150‑1 (MQ=255)                                                 cTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCg                                                                                          >  2:363031/1‑150 (MQ=255)                                                 cTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCg                                                                                          >  1:324146/1‑150 (MQ=255)                                                    cAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAg                                                                                       <  2:630947/150‑1 (MQ=255)                                                       aaGGCGGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTc                                                                                    <  2:507603/150‑1 (MQ=255)                                                           cAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGaaa                                                                                <  1:1200108/150‑1 (MQ=255)                                                               tCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCTACACCCCGCAGGTCGAAAGCGt                                                                            >  1:1172978/1‑150 (MQ=255)                                                                cacaGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCTACACCCCGCAGGTCGAAAGCGTc                                                                           <  2:1172978/150‑1 (MQ=255)                                                                cacaGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTc                                                                           <  1:174990/150‑1 (MQ=255)                                                                        gTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGaa                                                                                 >  1:296439/1‑136 (MQ=255)                                                                        gTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGaa                                                                                 <  2:296439/136‑1 (MQ=255)                                                                         ttCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGt                                                                  <  2:404577/150‑1 (MQ=255)                                                                             tttCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGaaa                                                              >  1:1046493/1‑150 (MQ=255)                                                                               tCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATAATCGCCATTGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAAc                                                            <  2:501602/150‑1 (MQ=255)                                                                                  acccaccACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGc                                                         >  1:480087/1‑150 (MQ=255)                                                                                    ccaccaCGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGtt                                                                      <  1:108821/135‑1 (MQ=255)                                                                                    ccaccaCGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGtt                                                                      >  2:108821/1‑135 (MQ=255)                                                                                    acccccagacgGCGAGCCTGGCGACCTGATCGGTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGt                                                       >  2:282695/8‑150 (MQ=255)                                                                                        cacGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAaga                                                                                                                                           <  2:371904/62‑1 (MQ=255)                                                                                        cacGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAaga                                                                                                                                           >  1:371904/1‑62 (MQ=255)                                                                                        cacGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGcc                                                   >  2:980293/1‑150 (MQ=255)                                                                                            acgCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAgg                                               >  1:572736/1‑150 (MQ=255)                                                                                              gccgcGCTAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGc                                             >  2:16579/1‑150 (MQ=255)                                                                                                  tctcacccGACCTGATCGCTGCCGGTGCCCTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGCCACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTg                                         <  1:383229/144‑1 (MQ=255)                                                                                                      aGCAGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGCACGAGGTTGCACAGGAAGCCGAGTTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGACAGCGTCCTGTTCGGTGAACACGGCGTGGCCGAGGGCATTGGcga                                     >  2:383229/1‑148 (MQ=255)                                                                                                       gCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATg                                                                                                         <  2:667743/81‑1 (MQ=255)                                                                                                       gCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATg                                                                                                         >  1:667743/1‑81 (MQ=255)                                                                                                          gACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTc                                                                           <  2:629853/108‑1 (MQ=255)                                                                                                          gACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTc                                                                           >  1:629853/1‑108 (MQ=255)                                                                                                           aCCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAgg                                                                                      >  1:1083394/1‑96 (MQ=255)                                                                                                           aCCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAgg                                                                                      <  2:1083394/96‑1 (MQ=255)                                                                                                                 tCGCTGCCGGTGCCGTGGCCCTGGCCAATCCGAAAGGGTTTGCCCAGGAAGGCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAggtgg                          <  2:480087/150‑1 (MQ=255)                                                                                                                   gCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAGgtggtg                        <  2:1106523/150‑1 (MQ=255)                                                                                                                   gCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAGgtggtg                        >  1:1165102/1‑150 (MQ=255)                                                                                                                     tGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAGGTGGTGAt                      >  2:1039878/1‑150 (MQ=255)                                                                                                                        cGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGGTGGCCCGAACAAGGTGGTGATCGa                   <  2:150065/150‑1 (MQ=255)                                                                                                                         ggTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCACCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAGGTGGTGATCGAc                  >  1:776497/1‑150 (MQ=255)                                                                                                                           tGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAGGTGGTGATCGACAt                <  1:363031/150‑1 (MQ=255)                                                                                                                            gCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTACCCGACACTCTCCATGTCTAAAGCTTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAGGTGGTGATCGACATg               >  1:797209/1‑150 (MQ=255)                                                                                                                              cGTGGCCCTGGCCAACCCGAAAGAggttggccagggccacggcaccggcagcgatcaggtcggctggcgcggcgtcgtggtgggtggaaatga                                                                      >  2:13376‑M2/1‑24 (MQ=255)                                                                                                                              cGTGGCCCTGGCCAACCCGAAAGAggttggccagggccacggcaccggcagcgatcaggtcggctggcgcggcgtcgtggtgggtggaaatga                                                                      <  1:13376‑M2/93‑70 (MQ=255)                                                                                                                                    ccTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGc                                       >  1:354164/1‑118 (MQ=255)                                                                                                                                    ccTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGc                                       <  2:354164/118‑1 (MQ=255)                                                                                                                                      tGGCCAACCCGAAAGAggttggccagggccacggcaccggcagcgatcaggtcggctggcgcggc                                                                                          <  2:58460‑M2/65‑50 (MQ=255)                                                                                                                                      tGGCCAACCCGAAAGAggttggccagggccacggcaccggcagcgatcaggtcggctggcgcggc                                                                                          >  1:58460‑M2/1‑16 (MQ=255)                                                                                                                                        gCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAGGTGGTGATCGACATGAGCTCGATCTCg   <  1:153432/150‑1 (MQ=255)                                                                                                                                         ccAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAGGTGGTGATCGACATGAGCTCGATCTCGc  >  2:904387/1‑150 (MQ=255)                                                                                                                                              ccGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAggtgg                          <  2:625684/121‑1 (MQ=255)                                                                                                                                              ccGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAggtgg                          >  1:625684/1‑121 (MQ=255)                                                                                                                                                     |                                                                                                                                          ATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGACGCCGCGCCAGCCGACCTGATCGCTGCCGGTGCCGTGGCCCTGGCCAACCCGAAAGAGGTTGCCCAGGAAGCCGAATTCATCATCGTCATGGTCCCCGACACCCCGCAGGTCGAAAGCGTCCTGTTCGGTGAAAACGGCGTGGCCGAGGGCGTTGGCCCGAACAAGGTGGTGATCGACATGAGCTCGATCTCGC  >  NC_002947/4889761‑4890046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.