New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5106327	46 (0.940)	3 (0.060)	3/240	NT	6.1%	coding (1833/3021 nt)	ydiJ	putative oxidoreductase
	?	NC_002947	= 5106375	48 (1.020)					coding (1785/3021 nt)	ydiJ	putative oxidoreductase

GGTTGTTGCGCAGACGCGCCGGCAGGCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAATGGTACGGTCAAGGTCGCCGCGCAGGGTCACGCCATC  >  NC_002947/5106227‑5106521                                                                                                                                                     |                                                                                                                                                   ggTTGTTGCGCAGACGCGCCGGCAGGCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGg                                                                                                                                                   >  2:1080063‑M2/1‑149 (MQ=255)           cAGACGCGCCGGCAGGCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCa                                                                                                                                         <  1:227447/150‑1 (MQ=255)                gcgcCGGCAGGCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCacgacg                                                                                                                                    <  2:1147426/150‑1 (MQ=255)                         ggCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATgg                                                                                                                           <  2:627722/150‑1 (MQ=255)                          gCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGTCTTCCACGACGGGCACATGGc                                                                                                                          <  1:150216/150‑1 (MQ=255)                          gCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGc                                                                                                                          >  2:171061/1‑150 (MQ=255)                          gCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGc                                                                                                                          >  2:1118673/1‑150 (MQ=255)                                   ccACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTggg                                                                                                                 <  2:450521/150‑1 (MQ=255)                                   ccACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGACACATGGCGTCGTTggg                                                                                                                 >  1:500493/1‑150 (MQ=255)                                   ccACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTGCGCCCCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTggg                                                                                                                 <  2:270666/150‑1 (MQ=255)                                    cACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTgggg                                                                                                                >  2:1011025/1‑150 (MQ=255)                                     aCGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGt                                                                                                               >  1:81221/1‑150 (MQ=255)                                        acacCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCAt                                                                                                            <  2:1137849/150‑1 (MQ=255)                                            cTTGCTGCGCGCCGCAGCAAACACATCCATGTTCGCCTGGCCCTGCAGGCGCAGCCCCTCGCGCATCAGCGAGGCGCGCCTCTTGGGCGAATGCTGGCGATCGCGGGTGTCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGtt                                                                                                        <  2:500493/150‑1 (MQ=255)                                              tgttgCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGt                                                                                                      <  2:81221/150‑1 (MQ=255)                                               gttgCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTa                                                                                                     <  1:1118673/150‑1 (MQ=255)                                                         gcAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCa                                                                                           <  1:845287/150‑1 (MQ=255)                                                            gccagcACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTg                                                                                        <  1:746011/150‑1 (MQ=255)                                                             ccagcACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGc                                                                                       >  2:1090781/1‑150 (MQ=255)                                                              cagcACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGcc                                                                                      <  1:610196/150‑1 (MQ=255)                                                              cagcACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGcc                                                                                      >  1:1132378/1‑150 (MQ=255)                                                                    aTCGATGTTCTCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCa                                                                                <  1:1090781/150‑1 (MQ=255)                                                                    aTCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCa                                                                                >  1:202315/1‑150 (MQ=255)                                                                      cGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGt                                                                              <  2:448526/150‑1 (MQ=255)                                                                           ttCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACg                                                                         <  1:1011025/150‑1 (MQ=255)                                                                            tcgcctcgccCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACgg                                                                        <  1:879941/150‑1 (MQ=255)                                                                                      cTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTCGCGTACGCGAGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGaa                                                              >  2:1138658/1‑150 (MQ=255)                                                                                         cAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTc                                                           >  2:270605/1‑150 (MQ=255)                                                                                            gcgcAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGgtggctgcgcctgcagggcgaggcgaacatcgatgtgctggctgcggcgcgcaacaaggtgtcg                                                                                    <  1:816592‑M2/122‑65 (MQ=255)                                                                                            gcgcAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGgtggctgcgcctgcagggcgaggcgaacatcgatgtgctggctgcggcgcgcaacaaggtgtcg                                                                                    >  2:816592‑M2/1‑58 (MQ=255)                                                                                                  ccACTGGCGCATAAGGGAGGCGCGCCCCTTTGGCGAATGCTGTCGTTCGCGGGTGGCCTTCAACGACGCGCACATGGCGTCGTTGGGGTGATTGGTGTAACAGGTGCCATTGCCGTTGCGGTGCACGGCGCTGGGGAAGTCCTGCCAAAc                                                  <  2:7809/150‑1 (MQ=255)                                                                                                  ccACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCAATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAAc                                                  >  1:275091/1‑150 (MQ=255)                                                                                                   cACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAAcg                                                 >  1:794767/1‑150 (MQ=255)                                                                                                   cACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAAcg                                                 >  1:198347/1‑150 (MQ=255)                                                                                                    aCTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGgtggctgcgcctgcagggcgaggcgaacatcgatgtgctggctgcggcgcgcaacaaggtgtcgtggctcaagggcctgccggcgcgtctgcgcaacaac                                                <  1:785832‑M2/150‑101 (MQ=255)                                                                                                      tCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACgcgc                                              >  1:856165/1‑150 (MQ=255)                                                                                                      tCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACgcgc                                              <  2:352613/150‑1 (MQ=255)                                                                                                      tCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGACACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACgcgc                                              >  2:922403/1‑150 (MQ=255)                                                                                                        gcgcATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTc                                            >  1:259880/1‑150 (MQ=255)                                                                                                        gcgcATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTACGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACACGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTc                                            >  1:1223057/1‑150 (MQ=255)                                                                                                         cgcATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCg                                           <  1:270605/150‑1 (MQ=255)                                                                                                              cAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAAt                                      <  1:255826/150‑1 (MQ=255)                                                                                                               aGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAATg                                     <  2:202315/150‑1 (MQ=255)                                                                                                                gCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAATgg                                    >  1:163667/1‑150 (MQ=255)                                                                                                                 cGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGGCGTTGGGGTCATAGTTGTAACAGGAGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAATGGt                                   >  1:715400/1‑150 (MQ=255)                                                                                                                    ggCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAATGGTACg                                <  2:1132378/150‑1 (MQ=255)                                                                                                                      ctcgcCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAATGGTACGGt                              <  2:28877/148‑1 (MQ=255)                                                                                                                       gcgcCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAATGGTACGGTc                             <  2:1285263/150‑1 (MQ=255)                                                                                                                         gcCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCCGTGCCAGGGGCGGGGGAAGTCCTGCCAAACGCGCTCGTCAATGGTACGGTCaa                           >  2:358144/1‑150 (MQ=255)                                                                                                                            ccTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTACCAAACGCGCTCGTCAATGGTACGGTCAAGGt                        >  1:839996/1‑150 (MQ=255)                                                                                                                                  gCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAATGGTACGGTCAAGGTcgccgc                  >  2:414814/1‑150 (MQ=255)                                                                                                                                       tGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAATGGTACGGTCAAGGTCGCCGCGCAgg             <  2:1253314/150‑1 (MQ=255)                                                                                                                                                  ccgGGTGGCTTTCTACGACGGGCATATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAATGGTACGGTCAAGGTCGCCGCGCAGGGTCACGCCATc  <  2:564835/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GGTTGTTGCGCAGACGCGCCGGCAGGCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGAAGTCCTGCCAAACGCGCTCGTCAATGGTACGGTCAAGGTCGCCGCGCAGGGTCACGCCATC  >  NC_002947/5106227‑5106521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.