New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1544501 =38 (0.520)18 (0.320) 13/210 4.1 45.9% intergenic (+18/+96) mdfA/ampG multidrug MFS transporter/muropeptide permease AmpG
?NC_002947 1544577 = 13 (0.230)intergenic (+94/+20) mdfA/ampG multidrug MFS transporter/muropeptide permease AmpG
Rejected: Coverage evenness skew score above cutoff.

CTGGCGATGATTGGCGCCGGTGCCAGCTTGCTGCATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATA  >  NC_002947/1544352‑1544589
                                                                                                                                                     |                                                                                        
ctgGGGTTGATTGGCGCCGGTGCCAGCTTGCTGCATTTGGCCCTGGGGGGGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGggccg                                                                                          <  2:314626/150‑1 (MQ=255)
   gCGATGATTGGCGCCGGTGCCAGCTTGCTGCATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGggccggcc                                                                                       >  1:1490997/1‑150 (MQ=255)
            ggCGCCGGTGCCAGCTTGCTGCATTTTGCCCTGGCGGCGGGGGTGGTGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCgg                                                                              <  2:927297/150‑1 (MQ=255)
            ggCGCCGGTGCCAGCTTGCTGCATTTTGCCCTGGCGGCGGGGGTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCgg                                                                              <  1:1103955/150‑1 (MQ=255)
            ggCGCCGGTGCCAGCTTGCTGCATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCgg                                                                              <  1:177634/150‑1 (MQ=255)
                  ggTGCCAGCTTGCTGCATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAAc                                                                        <  2:1047425/150‑1 (MQ=255)
                      ccAGCTTGCTGATTTCTGCCCTGGGGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGc                                                                    <  1:1139943/150‑1 (MQ=255)
                           ttGCTGCATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTa                                                               <  1:1751811/150‑1 (MQ=255)
                           ttGCTGCATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTa                                                               <  2:2882/150‑1 (MQ=255)
                            ggctgcATTTGGCCCGGGCGGCGGGGGTGGCGGGGGGGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGGGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTac                                                              <  2:346627/149‑1 (MQ=255)
                               tgcATTTTGCCCTGGCGGCGGGGGTGGCGGGAGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAcaca                                                           >  1:1230810/1‑150 (MQ=255)
                                gcATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGGCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAg                                                          <  2:1545802/150‑1 (MQ=255)
                                gcATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAg                                                          <  1:175851/150‑1 (MQ=255)
                                 cATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGggccg                                                                                          <  2:547855/117‑1 (MQ=255)
                                 cATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGggccg                                                                                          >  1:547855/1‑117 (MQ=255)
                                        cccTGGCGGGGGGGGGGGCGGGGGCGTTGGCGCTGTGGCGGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGgccgcgc                                                  <  2:996137/150‑1 (MQ=255)
                                        cccTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGgccgcgc                                                  >  1:1207331/1‑150 (MQ=255)
                                         ccTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGgccgcgcc                                                 <  1:12295/150‑1 (MQ=255)
                                                  gggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                        <  1:267766/150‑1 (MQ=255)
                                                        ggggggggCGTTGGCGCTGTGGCCGGGGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                  <  2:1490997/147‑1 (MQ=255)
                                                         gCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCggg                                 <  2:1207331/150‑1 (MQ=255)
                                                         gCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAAGGCCGCGCCGCTTTGTAGGAGCggg                                 <  1:53422/150‑1 (MQ=255)
                                                                ggtgggCGCTGTGGCCGCTGTGGTTGGGGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTAccc                          <  2:1230810/146‑1 (MQ=255)
                                                                     ggctggtgGGCGCGGGGGTTTGTGGTGGGTGGGCGGGCGGGGGAGGGGGGTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGaa                     <  2:318716/145‑1 (MQ=37)
                                                                         tgtgGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGt                                >  1:641231/1‑135 (MQ=255)
                                                                         tgtgGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGt                                <  2:641231/135‑1 (MQ=255)
                                                                          gtgGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTCTGTAGGAGCGGGTTTACCCGCGAagcgct                >  1:318716/1‑146 (MQ=255)
                                                                             gCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGc                                    <  1:326666/127‑1 (MQ=17)
                                                                             gCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGc                                    >  2:326666/1‑127 (MQ=17)
                                                                              ccGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCggg                                                                             <  2:443769/85‑1 (MQ=255)
                                                                              ccGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCggg                                                                             >  1:443769/1‑85 (MQ=255)
                                                                               cGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTaca                                                             >  2:630891/1‑100 (MQ=255)
                                                                               cGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTaca                                                             <  1:630891/100‑1 (MQ=255)
                                                                                        ttGTGGGGGGGGGGGGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCAGGCCTTCTCGCGGGTTGATCTGCGCCTACACAGGTTCGCTCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATa  <  2:1519313/150‑1 (MQ=25)
                                                                                                         ccTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                        >  2:1499065/1‑95 (MQ=17)
                                                                                                         ccTGGGGAAGGGGCTGTAGCTCGATAATCGGAATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                        <  1:1499065/95‑1 (MQ=17)
                                                                                                                   gggCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                  <  1:1527909/91‑1 (MQ=14)
                                                                                                                   gggCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                  >  2:1527909/1‑91 (MQ=14)
                                                                                                                                      tgTATTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGt                                          >  1:210327/2‑64 (MQ=14)
                                                                                                                                      tgTATTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGt                                          <  2:210327/63‑1 (MQ=14)
                                                                                                                                                     ggccTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCtt                                             <  1:210560/46‑1 (MQ=255)
                                                                                                                                                     ggccTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCtt                                             >  2:210560/1‑46 (MQ=255)
                                                                                                                                                     |                                                                                        
CTGGCGATGATTGGCGCCGGTGCCAGCTTGCTGCATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATA  >  NC_002947/1544352‑1544589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.