New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1544501 =	38 (0.520)	18 (0.320)	13/210	4.1	45.9%	intergenic (+18/+96)	mdfA/ampG	multidrug MFS transporter/muropeptide permease AmpG
	?	NC_002947	1544577 =	13 (0.230)					intergenic (+94/+20)	mdfA/ampG	multidrug MFS transporter/muropeptide permease AmpG
Rejected: Coverage evenness skew score above cutoff.

TTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAGGAAGAAGTCGTGG  >  NC_002947/1544440‑1544726                                                                                                                                          |                                                                                                                                                       ttGTGGGGGGGGGGGGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCAGGCCTTCTCGCGGGTTGATCTGCGCCTACACAGGTTCGCTCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATa                                                                                                                                            <  2:1519313/150‑1 (MQ=25)                                                                            tAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGa                                                                                                                <  1:1300764/103‑1 (MQ=255)                                                                            tAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGa                                                                                                                >  2:1300764/1‑103 (MQ=255)                                                                               aCCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCa                                                             >  2:1074196/1‑150 (MQ=255)                                                                                  cGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAggg                                                          >  2:839530/1‑150 (MQ=255)                                                                                      ccTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgat                                                      >  2:1679613/1‑150 (MQ=255)                                                                                        tACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                                                    >  1:320322/1‑150 (MQ=255)                                                                                          cacaGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagg                                                  >  1:423038/1‑150 (MQ=255)                                                                                               ggCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatcag                                             >  2:812282/1‑150 (MQ=255)                                                                                                 ccgcgccgcTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATGCAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCg                                           <  1:1679613/150‑1 (MQ=255)                                                                                                  cgcgccgcTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGt                                          >  1:609820/1‑150 (MQ=255)                                                                                                   gcgccgcTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTa                                         <  1:812282/150‑1 (MQ=255)                                                                                                         cTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCAcc                                   >  2:1183143/1‑150 (MQ=255)                                                                                                          ctggTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCAccc                                  >  2:440464/4‑150 (MQ=255)                                                                                                                   gCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAgcg                         >  1:359221/1‑150 (MQ=255)                                                                                                                      ggTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCg                      >  2:1325031/1‑150 (MQ=255)                                                                                                                             ccGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAg               >  2:934847/1‑150 (MQ=255)                                                                                                                             ccGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAg               >  2:218415/1‑150 (MQ=255)                                                                                                                               gcgAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAGga             >  2:260036/1‑150 (MQ=255)                                                                                                                                cgAAGAGGCCATCACTGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGCAGGT‑GGAAGCGGGCGTGCCCCCGCCCGGCTTCCGTAGTCCACTGCAGGGCGCTCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAGgaa            <  1:839530/150‑1 (MQ=255)                                                                                                                                    gagGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCcagc                             >  2:970971/1‑129 (MQ=255)                                                                                                                                    gagGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCcagc                             <  1:970971/129‑1 (MQ=255)                                                                                                                                     agGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAGGAAGAAGt       >  2:1372284/1‑150 (MQ=255)                                                                                                                                       gCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCAc                                    <  1:781089/119‑1 (MQ=255)                                                                                                                                       gCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCAc                                    >  2:781089/1‑119 (MQ=255)                                                                                                                                        ccAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAGGAAGAAGTCGt    <  1:440464/150‑1 (MQ=255)                                                                                                                                         cAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAGGAAGAAGTCGTg   <  1:260036/150‑1 (MQ=255)                                                                                                                                         cAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAGGAAGAAGTCGTg   >  1:24274/1‑150 (MQ=255)                                                                                                                                         cAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAGGAAGAAGTCGTg   >  1:1006268/1‑150 (MQ=255)                                                                                                                                          aGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAGGAAGAAGTCGTgg  <  1:934847/150‑1 (MQ=255)                                                                                                                                          aGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAAGCACCCCCAGCAGCGCCGTGATCAGGAAGAAGTCGTgg  <  1:686890/150‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                       TTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGT‑CCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCCCCAGCAGCGCCGTGATCAGGAAGAAGTCGTGG  >  NC_002947/1544440‑1544726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.