New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	874287 =	92 (0.800)	7 (0.070)	7/200	NT	10.9%	intergenic (+21/‑138)	PP_0758/PP_0759	hypothetical protein/hypothetical protein
	?	NC_002947	874351 =	39 (0.420)					intergenic (+85/‑74)	PP_0758/PP_0759	hypothetical protein/hypothetical protein

TTACGCATGAAAACACTCCCTATCCACATGCGCCGTATCCTAGGCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/874453‑874287 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggagcgggcttgcccgcgaaGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGC  >  NC_002947/874351‑874495                                                                                                                                                                                                                                                                                                                          TTACGCATGAAAACACTCCCTATCCACATGCGCCGTATCCTAGGCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGA                                                                                                                                                                    >  1:1085197/1‑150     GCATGAAAACACTCCCTATCCACATGCGCCGTATCCTAGGCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGG                                                                                                                                                                <  1:2160644/150‑1         GAAAACACTCCCTATCCACATGCGCCGTATCCTAGCCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTT                                                                                                                                                            <  1:2140501/150‑1             ACACTCCCTATCCACATGCGCCGTATCCTAGGCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCC                                                                                                                                                        <  1:659348/150‑1             ACACTCCCTATCCACATGCGCCGTATCCTAGGCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCC                                                                                                                                                        <  1:2589465/150‑1               ACTCCCTATCCACATGCGCCGTATCCTAGGCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGC                                                                                                                                                      >  2:2858186/1‑150                          ACATGCGCCGTATCCTAGGCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGG                                                                                                                                                                >  1:257813/1‑129                          ACATGCGCCGTATCCTAGGCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGG                                                                                                                                                                <  2:257813/129‑1                            ATGCGCCGTATCCTAGGCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGT                                                                                                                                                                        <  2:987635/119‑1                            ATGCGCCGTATCCTAGGCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGT                                                                                                                                                                        >  1:987635/1‑119                                              CGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGG                                                                                                                                                                <  1:1988502/109‑1                                              CGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGG                                                                                                                                                                >  2:1988502/1‑109                                                 GTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTT                                                                                                                                                            >  2:388176/1‑110                                                 GTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTT                                                                                                                                                            <  1:388176/110‑1                                                    GCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGC                                                                                                                                                              >  1:2643238/1‑105                                                    GCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGC                                                                                                                                                              <  2:2643238/105‑1                                                    GCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTA                                                                                                                                                                       >  2:1559845/1‑96                                                    GCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTA                                                                                                                                                                       <  1:1559845/96‑1                                                                CATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGCGAA                                                                                                                                                   <  1:663691/104‑1                                                                CATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGCGAA                                                                                                                                                   >  2:663691/1‑104                                                                                                        TTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGG                                                             >  2:2752330/1‑150                                                                                                                   GCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGG                                                                   <  2:783741/133‑1                                                                                                                   GCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGG                                                                   >  1:783741/1‑133                                                                                                                     CCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCG                                                                                                                 <  1:2681938/85‑1                                                                                                                     CCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCG                                                                                                                 >  2:2681938/1‑85                                                                                                                           CTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGT                                          >  2:2798646/1‑150                                                                                                                                GGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTT                                     <  1:2798646/150‑1                                                                                                                                         ttatccgTGTAGTAGCGGGCGTGCCCGCGAAGAGGCCGGTTCAGGCGACGCAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCTCATGTGCAGAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGC                            <  2:316796/143‑1                                                                                                                                                  TAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGACTGATTTCATGTGTAAGACGTTGGTCATCAGCCTGCTGAGa                   >  2:807361/1‑149                                                                                                                                                    GGAGCGGGCTTGCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGC                 <  1:2125973/150‑1                                                                                                                                                       GCGGGCTTGCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGG              <  2:1463596/150‑1                                                                                                                                                              TGCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTG       <  1:86507/150‑1                                                                                                                                                               GCCCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGC      <  2:2589465/150‑1                                                                                                                                                                 CCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTG    >  2:892767/1‑150                                                                                                                                                                 CCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTG    >  1:174354/1‑150                                                                                                                                                                 CCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTG    >  1:2784323/1‑150                                                                                                                                                                 CCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCA                                                                                                        >  2:2688890/1‑50                                                                                                                                                                 CCGCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCA                                                                                                        <  1:2688890/50‑1                                                                                                                                                                   GCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGC  >  1:2116196/1‑150                                                                                                                                                                   GCGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGC  >  1:3040566/1‑150                                                                                                                                                                    CGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAG                                                                                   >  1:915328/1‑68                                                                                                                                                                    CGAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAG                                                                                   <  2:915328/68‑1                                                                                                                                                                     GAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTG                         <  2:619140/125‑1                                                                                                                                                                     GAAGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTG                         >  1:619140/1‑125                                                                                                                                                                                                                                                                                                                          TTACGCATGAAAACACTCCCTATCCACATGCGCCGTATCCTAGGCCGAGTCGCCAGTGGCTGCCATAGCCGCAGGGAAGATTTTCGTCGCCTGAACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAAAGGGGTAACACGATCATTGTAGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/874453‑874287 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggagcgggcttgcccgcgaaGAGGCCGGTTCAGGCGACGAAAATCTTCCCTGCGGCTATGGCAGCCACTGGCGACTCGGCCTAGGATACGGCGCATGTGGATAGGGAGTGTTTTCATGCGTAAGTCTTTTGTCATCAGCCTGCTGAGTGCTGGCATCCTGCTGGC  >  NC_002947/874351‑874495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.